UFO02221.5prime Sequence
1098 bp (998 high quality bases) assembled on 2008-12-21
> UFO02221.5prime
CAGTCGACATGAATCCCGTACCGAGCCGCGAGTTCCTGGAGGTTCATCCG
CTGCACCAGCATCAACCACACTGTAAGCAGCAATGTTTTGTATTCACGGA
GATAGCGGACATCGAACTGCCCGCGGAGATAACCAAGTTCGGAGGTGGAA
ATGAAAAGATTAGGTGCTCCAACGGGGGCATCCCCACTTACAGCTCCAAG
AAGGACTCCTGCAGCGAGTCCTCTGCGGAGAGACCAGAGAGATCACGAGG
ACGAAAGATTTTGCTGGGCGTTGGTGTGGTGCTCGTGTGCATTGCCATGG
CGGGTGGTATTCCGCTGGCCCTCCAGTTGCGCTCTTCGTCGCTCCTGGAG
GCCCGACTCGCCTTCATCCGCCGCCTGCTGACGGAGTCTCCACTGATCGA
GGGCTCGTGGAAGCCACCGAGCACCATGAGCCTGAACAGCAGCAACCTCT
TCGAGGTGCGACAGAATCACATCGGTGCTGTGCTCTGGCCCATTGCTGTG
CCGTGCGGAGCTCAGTACTTGGATGCCGTGCAGCTCACACTGGAGGGCAT
TGATAGGGCCAAGCGGATTACCGCCGCCACAGATTCCATGCACATCGTCG
AATCAGCTGATGAAATGGAGCAGACTCACATCCGCGGCGAGGTGGCTGTT
CTCATGGGTATCAGTGGTGGCCATGCTCTGGGCACCAGCACGGCCGTCTT
GCGTTCCATCTACCTGCTGGGAGCACGATTCGTCTCGATTACGAGCCTGG
AGTGCACCACTCCTTGGGCGGCGGCAGCAATCCGGAGACCCGATTATCTT
GTTGAGGAAAATGTTACGAATTCATTCAACGAATTTGGGACAGACCATGC
TCTTTGAGATGAACCGCCTGGCATGCTGGTGGAGATTTCGATGCTCAGCG
AGCTGCCATGTTGGCTGTTTGAAACTGCCAAAGCTCCTGTTTTACTCACG
ATGCACACGCTGTCATGTGCATAGCAGCACATTGCTCATCAGACACGTCT
CAGCTATGCGAAATGGAGGCGTATCTTGCTCACCTGGAGCGTTGTGGCGA
TCGAACCTGGGCGTCGCGAGAATACTGCATCACTTGTGCCAAGTAGCC
UFO02221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5282-RA | 1543 | CG5282-RA | 113..1198 | 9..1070 | 4785 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20425130..20425959 | 838..9 | 4135 | 99.9 | Minus |
| 3L | 28110227 | 3L | 20424962..20425075 | 951..842 | 390 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:54:48 has no hits.
UFO02221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:57 Download gff for
UFO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 144..1100 | 1..951 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:38 Download gff for
UFO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 102..1058 | 1..951 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:30 Download gff for
UFO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5282-RA | 102..1058 | 1..951 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:30 Download gff for
UFO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20424962..20425073 | 844..951 | 96 | <- | Minus |
| 3L | 20425126..20425970 | 1..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:38 Download gff for
UFO02221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20418062..20418173 | 844..951 | 96 | <- | Minus |
| arm_3L | 20418226..20419070 | 1..843 | 99 | | Minus |
