UFO02222.5prime Sequence
1148 bp (1007 high quality bases) assembled on 2008-12-21
> UFO02222.5prime
CAGTCGACATGCCGCCCACCATAACCGATAATCAGACGCACGACTTTAAG
GCCCACTACGATTGCGCCCACAGGTCCTCGCTGCAGGACGACGAGACGGA
CGATGCGTACGTGAAAAGGATAACGCGGTACTCCGATGGAACCGTCAAAT
TGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCTATCACCTG
GCCTTGGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAA
GTTCGTTTGCATGGGCGGCACACCAAAGCGCATGGAGAATTTTGCCCATT
TCATAATGAACGAGATTGGCTACAAGTTGCCAGCGGGCACCCAGCTGCAG
GACATCAGCGCCTATTCGTATCGCTACTCCATGTACAAAGTGGGACCGGT
GCTGTGCGTCAGCCATGGCATGGGTACGCCCTCGGTCAGCATCCTGATGC
ATGAGATGATCAAGCTGATGTACCACGCCAAGTGCAAGGATCCCGTCTTC
ATCAGGATAGGAACGTGCGGAGGAATTGGCGTCGACGGCGGCACCGTCAT
CATCACCGAAGATGCCCTCGATGGGCAGCTGAGGAACTCCCATGAGTTTA
CCATTCTCGGCAAGACCATCCATCGTCCTGCCAAGCTGGACAAAAAGCTG
GCCCGTGAGCTAAAGTCCCTGGCCAGTCCCGATGATCCGTACGATACCAT
TATTGGCAAGACGCTGTGCACCAACGATTTCTACGAGGGCCAGGGTCGTT
TGGACGGCGCATTCTGTGATTTCAGCGAGAACGAGAAGATGGCCTATCTG
GAGAAGCTGCGCGAGAACGGCGTGGTCAACATCGAGATGGAGAGCACCAT
CTTTGCGGCCCTGACCCACCATGCCGGCATCAAGGCAGCGGTGGTGTGTG
TCGCCCTGCTGAACCGCTCAATGGGGATCAGGTCAACGCCGCCCAAGGAG
TCATGAACGAGTGCAAGCGCGTCCGCAAATCCTCGTGTCGCGCTAATATT
CGCAAGTCTTACGCACATGGACAGCTGAGGCGCTATTCGACAACAGGGAT
CATCCAGTCACTCGGCCTTCAGCTCGTCAGACAGAAGTCTCAAGCCAGAA
GCCAAGCTTTCTAACAATTCGTTGGCGCGGCAGTATGGTCTATCATAT
UFO02222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6330-RA | 1541 | CG6330-RA | 132..1230 | 8..1096 | 5020 | 98 | Plus |
| CG6330-RB | 2075 | CG6330-RB | 355..1333 | 128..1096 | 4420 | 97.8 | Plus |
| CG3788-RB | 1758 | CG3788-RB | 928..1104 | 377..553 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26951072..26951428 | 599..243 | 1755 | 99.4 | Minus |
| 3R | 32079331 | 3R | 26950645..26951009 | 963..600 | 1685 | 98.1 | Minus |
| 3R | 32079331 | 3R | 26951775..26951899 | 251..127 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 26953001..26953123 | 130..8 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 22932746..22932922 | 553..377 | 345 | 79.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 255..173 | 111 | 60.7 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 255..173 | 111 | 60.7 | Minus |
UFO02222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:09 Download gff for
UFO02222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RA | 127..1190 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:47 Download gff for
UFO02222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RA | 129..1192 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:28 Download gff for
UFO02222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RA | 129..1192 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:28 Download gff for
UFO02222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26950638..26951009 | 600..969 | 98 | <- | Minus |
| 3R | 26951072..26951419 | 252..599 | 100 | <- | Minus |
| 3R | 26951775..26951898 | 128..251 | 100 | <- | Minus |
| 3R | 26953004..26953126 | 1..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:47 Download gff for
UFO02222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22778726..22778848 | 1..127 | 96 | | Minus |
| arm_3R | 22776360..22776731 | 600..969 | 98 | <- | Minus |
| arm_3R | 22776794..22777141 | 252..599 | 100 | <- | Minus |
| arm_3R | 22777497..22777620 | 128..251 | 100 | <- | Minus |
