UFO02223.5prime Sequence
1122 bp (1035 high quality bases) assembled on 2008-12-21
> UFO02223.5prime
CAGTCGACATGAGCCACCACTGGGGATACACCGAAGAGAACGGACCTGCC
CACTGGGCCAAGGAGTACCCACAGGCGTCGGGACATCGTCAGTCGCCCGT
GGATATCACACCCTCCAGCGCCAAGAAGGGCAGCGAACTGAATGTAGCTC
CGCTCAAGTGGAAGTATGTGCCGGAGCACACCAAAAGCCTGGTCAATCCT
GGCTATTGCTGGCGCGTGGATGTGAACGGCGCCGACTCCGAGCTGACTGG
AGGACCGCTGGGCGATCAGATCTTTAAGCTGGAGCAGTTCCACTGCCACT
GGGGCTGCACGGACTCCAAGGGATCGGAGCACACCGTCGACGGCGTGTCC
TATTCCGGCGAGCTGCATTTGGTTCACTGGAACACCACGAAGTACAAGTC
GTTTGGCGAGGCGGCTGCCGCTCCCGACGGCCTGGCCGTGCTGGGTGTGT
TCCTTAAGGCTGGCAATCACCATGCCGAACTGGACAAGGTGACCAGCCTG
CTGCAGTTCGTGCTGCACAAGGGCGATCGCGTCACCCTCCCCCAGGGCTG
TGATCCCGGCCAGCTGCTGCCCGATGTGCACACCTATTGGACCTATGAGG
GTTCCCTGACCACTCCACCGTGCTCGGAGTCGGTCATCTGGATCGTGTTC
AAGACGCCCATCGAAGTGTCCGACGACCAGCTGAACGCCATGCGCAATCT
CAATGCCTACGACGTGAAGGAGGAGTGCCCCTGCAACGAGTTCAACGGCA
AGGTCATCAACAACTTCCGTCCTCCGCTGCCGCTGGGCAAGCGTGAGCTG
CGCGAGATCGGGGGCCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCCCCCCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGACAAATCCAGATGGAGTCTGA
GTCATTACTGGATCTATCACAGGAGTCAAGCCGAGCTCCGATTTCAAATT
ACGCCCCGGCCTGCCACTCATCGCAGTACTGTTGTAATTCATAGCATTCT
GCGCGAATTGAAGCACCAACGC
UFO02223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAH1-RA | 1456 | CG7820-RA | 304..1113 | 9..818 | 4050 | 100 | Plus |
| adat-RA | 3003 | CG16889-RA | 1767..2555 | 818..42 | 3745 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13809034..13809651 | 201..818 | 3090 | 100 | Plus |
| 2L | 23513712 | 2L | 13808808..13808968 | 42..202 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:00:44 has no hits.
UFO02223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:07 Download gff for
UFO02223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAH1-RA | 294..1116 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:15 Download gff for
UFO02223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAH1-RA | 295..1117 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:59 Download gff for
UFO02223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAH1-RA | 295..1117 | 1..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:59 Download gff for
UFO02223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13808809..13808967 | 43..201 | 100 | -> | Plus |
| 2L | 13809035..13809655 | 202..823 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:15 Download gff for
UFO02223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13808809..13808967 | 43..201 | 100 | -> | Plus |
| arm_2L | 13809035..13809655 | 202..823 | 99 | == | Plus |
