UFO02228.5prime Sequence
1104 bp (997 high quality bases) assembled on 2008-12-21
> UFO02228.5prime
CAGTCGACATGGCGTCCAGTAAAATCCCCGATTGGGTAACTGCAGAAATA
TTTGAAGATTTGCTTAAGGCAAATGTGGATGGATACTCAAAAATTAAGAA
CTTTAAGGCGGACATTGGATCCGCTGCAGGTGAAAATTATGCCACCATTA
TGCTTCGAGTCAAAATCGAAGTTGAGCTGCAGGATGGCAAATCGAAATCG
GTATCCTACATGGTTAAGTTGCCCCACCAAGTGGAGGCTATTCAGGAGAT
GATGAAACGAACCAACATCTTCGAAATCGAGCGTACCATGTATAACGAGG
TTGTACCTGAACTAGAGGCGCTTTACAAGGCAGTAGGAGTGGACATCACA
TTCGGCGCCAAAAACTATGATCTCAAGAATGCCAAGACAGACTACGTGGC
CCTGGAGGATTTGGGGTTGAAAGGGTTCAAGAATGCCAACCGCCTCGAAG
GGCTGGATCAAGAGCACACGGAGAGGGTTCTGCGAAAGCTATCCCAATGG
CATGCTGCATCAGCTGTACGAGTGGCCACCAAAGGACCCTATCCCAAAAT
CCTACTTCAAGGCTTCTTTAAGGAGGAAAGCAGGCCCGTTATGTCTGAAA
TGATAAAAGGAATGGGCGCGAATTTCGTTAAAAGCTGCGCCACCTACGAA
GGTCATGAGGCTTATTTAGACAAAGTCAAAGCGTTACAGCCTGTTGCTAT
AGATAAGATTTTTGAGTTCGCCAAGGTCGAGCCAACGGAGTTCAACGTTC
TGAACCACGGCGATTCGTGGTCAAACAATATAATGTTTCAGTATGATGCC
TTTGGAAAGATCAAGGAGGTGTATTTGGTCGACTACCAGCTGCCCAAGTA
CGGAACCGTGGCACAGGATCTGCTCTACTTCTTGCTCTCATCCACAAAGC
TGGGAGATAACTGGCCAAATTCGATTATTATTATAAAATTTATCACGATA
TCTGGTGAGCACCTGAGATTTTGAAATACTCGAAACCCATTCTAGTCTGC
AGAATATTTCATTTGCGCTGTCAATACGCTACTCGGCTACACGTCGCTAC
TGAGTATGTCTGCTTTCTTTGAATCCACGAACGGCTAGTTTGAACTCATA
GGGT
UFO02228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10562-RA | 1527 | CG10562-RA | 80..1154 | 9..1070 | 4885 | 98 | Plus |
| CHKov1-RE | 1463 | CG10618-RE | 94..1001 | 21..927 | 1135 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25321958..25322452 | 677..183 | 2475 | 100 | Minus |
| 3R | 32079331 | 3R | 25321571..25321889 | 992..678 | 1335 | 97.5 | Minus |
| 3R | 32079331 | 3R | 25322504..25322678 | 183..9 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 25323997..25324411 | 677..263 | 590 | 76.1 | Minus |
| 3R | 32079331 | 3R | 25323703..25323880 | 903..726 | 395 | 81.5 | Minus |
| 3R | 32079331 | 3R | 25329061..25329223 | 183..21 | 245 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:42 has no hits.
UFO02228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:49 Download gff for
UFO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10562-RA | 66..1100 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:05 Download gff for
UFO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10562-RA | 72..1106 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:47 Download gff for
UFO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10562-RA | 72..1106 | 1..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:47 Download gff for
UFO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25321571..25321889 | 678..992 | 97 | <- | Minus |
| 3R | 25321958..25322451 | 184..677 | 100 | <- | Minus |
| 3R | 25322504..25322685 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:05 Download gff for
UFO02228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21147293..21147611 | 678..992 | 97 | <- | Minus |
| arm_3R | 21147680..21148173 | 184..677 | 100 | <- | Minus |
| arm_3R | 21148226..21148407 | 1..183 | 97 | | Minus |
