UFO02230.5prime Sequence
1117 bp (1005 high quality bases) assembled on 2008-12-21
> UFO02230.5prime
CAGTCGACATGGCGATCGCATTTAATATTGCGATCTATGCAATAATTTTA
GTGGGTAGTTTGGTACCCAGCAAGACTCAGGAATGGGTTCCATATGCATA
TCCTGTAGATGAAAATCAAGGATTGAATGAACAGACACAGTGGCAGTCAC
AATCACAGATTCAGAGTCAAGGGACGTCACAATCACAAAGTCAAGCTCAA
ATTCAATCACAGCCTGAACCAAGGTCATGTTTACAATGTCAACAAGCTAG
TTACCAACAATTCTTTGCGGAGGTGGACATCCAGATCGACGCCAAGCTGG
AGACGCCCAAAATGATCTCAAAATATGGACATCAAGTAGAGACCCATTAC
GCATTCACTGCCGACGGCTACAAGCTCTGCCTGCATCGGATTCCGCGGTC
TGGAGCTACACCCGTCCTATTGGTCCATGGCCTGATGGCCAGCTCGGCCA
CTTGGGTGCAGTTCGGTCCATCCCAGGGTCTGGCCTACATCCTGTCCCAA
AGCGGCTACGACGTCTGGATGTTGAACACAAGGGGTAACGTTTACTCGGA
GGAGCGCCTGGCCGGTCGGGAGAGCGACAAGATCTTCTGGGACTTCTCCT
TCCACGAGATCGGGCAGTACGATCTACCCGCTGCCATCGACTTGATCCTG
CTGCAGACTAAAATGCCGAGCATCCAGTACATTGGTCACTCGCAGGGATC
CACGGCCTTCTTTGTGATGTGTAGTGAAAGGCCTGAGTATGCAGGCAAGA
TCTCATTGATGCAGTCCCTCTCGCCATCAGTTTATATGGAAAGGAACACG
CAGTCCAGCACTTAAGTTTATGAAATTATTTTCGGGTGCTTCACAATGTT
GTTGAATCTCTTGGCGGCCACAAGATCTCCCTGAAAACAGATTGTTGACA
TGTTCGTACCACATCTGCACCAAACTTATCCCAGTCGCATCTGTGCCATC
TTTGAATTTGTGTGTGCGATTTAACTTCACAGCTTCATATGACACTATTC
CCCATTTGAGTCACGCCTCGCAGAGCTCCGCCAAGCAGATCTATCACTCG
CCATGCAGCATCTGCTTTCAAAGATACGACTACGCCTATTCGAATAGATA
CGCATACAGTCGACTTC
UFO02230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18284-RB | 1460 | CG18284-RB | 21..1159 | 5..1113 | 4850 | 96.6 | Plus |
| CG18284-RC | 1539 | CG18284-RC | 21..1159 | 5..1113 | 4850 | 96.6 | Plus |
| CG31872-RB | 3401 | CG31872-RB | 2067..2921 | 209..1046 | 3215 | 92.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10644557..10645089 | 305..838 | 2620 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10642176..10642695 | 305..825 | 2390 | 97.7 | Plus |
| 2L | 23513712 | 2L | 10643991..10644150 | 5..164 | 785 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10644340..10644485 | 160..305 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 10645160..10645282 | 846..962 | 340 | 92.7 | Plus |
| 2L | 23513712 | 2L | 10642802..10642906 | 863..962 | 255 | 89.5 | Plus |
| 2L | 23513712 | 2L | 10641997..10642093 | 209..305 | 245 | 83.5 | Plus |
| 2L | 23513712 | 2L | 10649023..10649179 | 587..743 | 230 | 76.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:24 has no hits.
UFO02230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:46 Download gff for
UFO02230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RA | 6..1083 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:06 Download gff for
UFO02230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 18..1095 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:33 Download gff for
UFO02230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18284-RC | 18..1095 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:33 Download gff for
UFO02230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10643988..10644150 | 1..164 | 97 | -> | Plus |
| 2L | 10644345..10644485 | 165..305 | 100 | -> | Plus |
| 2L | 10644558..10645097 | 306..845 | 99 | -> | Plus |
| 2L | 10645160..10645315 | 846..991 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:06 Download gff for
UFO02230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10643988..10644150 | 1..164 | 97 | -> | Plus |
| arm_2L | 10644345..10644485 | 165..305 | 100 | -> | Plus |
| arm_2L | 10644558..10645097 | 306..845 | 99 | -> | Plus |
| arm_2L | 10645160..10645315 | 846..991 | 93 | -> | Plus |
