UFO02232.5prime Sequence
1081 bp (977 high quality bases) assembled on 2008-12-21
> UFO02232.5prime
CAGTCGACATGGCCGAGACAATCAACAACAAGCCGAGCATACAGATCCGC
AGCGGACTGCCCTCGCCTCTGCCGGACAAGAGTCCCTCGCCGGCCACCAA
GCTGCTGATCAGCCACGGCAAGCCCAACTTCACCATCGCCAAGTCGCCGA
AGATCGACGAGAACGGAAACGGAAACCCACTGTCCGCCCAGCCCAGCGCC
AACAACAACTACAACGCCTACAAGAGCGCCAACAGCAGCGTGGCCAACAG
CCAGAAGTTCATAGTGGGCACCAAGTTCAATGGGGTCTTCAAGCCATCGA
ATGCCGCGGCCACTTGGGCAACCAATGGAAGCACCAATGGCAATGGCACC
GCGGAGTCGGAGAACGAGGTGGCCAAGGTCGTGCTGCGACGACCCAAGGT
GGCGGACTCACCCCCACCCGCCGAGGGCGAGGACGAGAACGTGCCGGAGT
TCATCAGGCGCCAGCGACTCATCCAGGAGCGTCTGGCCAAGGAGAACGTG
CTGGACTTTGAGAGCCGGCGCAGCGGCTACTTCACGCACGTTATGATCTC
GCCGGACTCGCCCAATCGCACCTCGTTCGTGGAGACCATGGCCAGTCCGG
CCATTGTGCCCGCCCTCGAGATTCCCGCTCCCGTGGCCGAGAAGGTGGAG
GAGGAGGAGAAGGTGGAGGTACAGCCTCAGGTGGCCGCTGTAACCACCTC
TGCCCTGATCACTAAACCCGAACCAGAGGACCCTGTAAGCAATGGACACA
GTGAGGAGCCAAAGAACTCTGACGTAGACCCGAAGAAGTGGCCAAGGCCA
TTGAGCAAGTTAACCAGGCAGTGGCAGGAGAGGATGAGGCGGAGTGGAAG
CCACCCCTGAGCCAGTTCCAGATCTACTCCAGAGCCAGTGCAGCCGAACG
AAAGCGGAGCCGTGTAGAGGAGCTCACTCAAGCTCCGCAGCGTGAGCAGT
GAGTGTGAGCCAGCTGCTCCGTGCAAATGCAGAGGAGGAGGAGAGCTGTT
CTGCACATGACTAGAGAGGAGCTGCTCTGCCACATGTCTAGAGAGGCGGA
TGCATACATCGCCACCACGACGAGACGATGA
UFO02232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hebe-RF | 1820 | CG1623-RF | 124..1067 | 6..941 | 4490 | 98.9 | Plus |
| hebe-RE | 1825 | CG1623-RE | 129..1072 | 6..941 | 4490 | 98.9 | Plus |
| hebe-RD | 1956 | CG1623-RD | 260..1203 | 6..941 | 4490 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9828863..9829800 | 936..6 | 4310 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 21:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6912 | 108..273 | 154 | 58 | Plus |
UFO02232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:43 Download gff for
UFO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1623-RE | 96..1046 | 1..941 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:57 Download gff for
UFO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1204 | 1..941 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:45 Download gff for
UFO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hebe-RD | 254..1204 | 1..941 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:45 Download gff for
UFO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9828774..9829806 | 1..1007 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:57 Download gff for
UFO02232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5716279..5717311 | 1..1007 | 97 | | Minus |
