Clone UFO02233 Report

Search the DGRC for UFO02233

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:22
Well:33
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptBmcp-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02233.5prime Sequence

1111 bp (1021 high quality bases) assembled on 2008-12-21

> UFO02233.5prime
CAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTTACGGCGGA
GTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGACACGACGAA
GACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTTCTCGCAGC
TGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCCGCGAGGAG
GGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTGAGACAAGC
GACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAAGAAGCTGG
CCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGCGTGTGTGG
AGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCGGCCATTGC
TAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGGGAAGGGAC
AGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAATACGAGGGC
GTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGTGCCGTAGT
TATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCTGCAGTTAA
TGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGAGCTTTATT
GCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTAATCCGGAC
GCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGGAGTGGTCA
CGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACTGTGCTGTA
CAGACTATCAGAACGAAGGTCTACCCGCCCTGTACAAAGGTTTCATTCCC
ACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTATTACCTACGAC
AACTAAAGAAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAGTGTCATAATCATATCATATCATATCATATCACAACTAGCTAGG
AGATCTGTCATGACTAGTGCCTGATCTCACATAAAACGCCGGCGCACGAA
CGTTCTGACCATCGATGATTCTGAGGTCTACTGATCTTCAAGGAATTCAA
GCGAATGATTC

UFO02233.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Bmcp-RB 1687 CG7314-RB 192..1100 9..914 4470 99.7 Plus
Bmcp-RA 1618 CG7314-RA 192..1100 9..914 4470 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11722004..11722418 223..637 2075 100 Plus
3L 28110227 3L 11722588..11722807 698..914 950 98.6 Plus
3L 28110227 3L 11721316..11721464 75..223 745 100 Plus
3L 28110227 3L 11721125..11721192 9..76 340 100 Plus
3L 28110227 3L 11722465..11722532 631..698 310 97.1 Plus
Blast to na_te.dros performed on 2014-11-28 19:21:30 has no hits.

UFO02233.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:41 Download gff for UFO02233.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RB 198..1114 1..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:37 Download gff for UFO02233.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 184..1100 1..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:30 Download gff for UFO02233.5prime
Subject Subject Range Query Range Percent Splice Strand
Bmcp-RA 184..1100 1..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:30 Download gff for UFO02233.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11721117..11721191 1..75 94 -> Plus
3L 11721317..11721464 76..223 100 -> Plus
3L 11722005..11722418 224..637 100 -> Plus
3L 11722472..11722532 638..698 100 -> Plus
3L 11722589..11722807 699..914 98 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:37 Download gff for UFO02233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11715689..11715907 699..914 98 == Plus
arm_3L 11714217..11714291 1..75 94 -> Plus
arm_3L 11714417..11714564 76..223 100 -> Plus
arm_3L 11715105..11715518 224..637 100 -> Plus
arm_3L 11715572..11715632 638..698 100 -> Plus