UFO02233.5prime Sequence
1111 bp (1021 high quality bases) assembled on 2008-12-21
> UFO02233.5prime
CAGTCGACATGGGTGAAGTGAAGGATTGGCGGCCCTTCGTTTACGGCGGA
GTCGCCTCAATCACGGCGGAATTTGGCACCTTTCCTATCGACACGACGAA
GACGCGCCTCCAAATCCAAGGTCAGAAAATCGACCAATCGTTCTCGCAGC
TGCGATATCGCGGCATGACCGATGCCTTTGTAAAAATCTCCCGCGAGGAG
GGGCTGAGGGCCCTCTATTCCGGTATTTGGCCAGCAGTTTTGAGACAAGC
GACCTATGGCACCATCAAGTTTGGAACCTACTACACCCTGAAGAAGCTGG
CCAACGAACGCGGCTTGCTGATCAACGAGGACGGCAGCGAGCGTGTGTGG
AGCAATATTTTGTGCGCGGCGGCGGCGGGAGCGATCTCTTCGGCCATTGC
TAACCCCACGGACGTGCTGAAAGTGCGAATGCAGGTGCATGGGAAGGGAC
AGCACAAGGGCCTGCTGGGCTGCTTCGGTGAGATCTACAAATACGAGGGC
GTTCGTGGACTGTGGCGTGGTGTGGGTCCGACGGCTCAGCGTGCCGTAGT
TATCGCCTCCGTTGAGCTGCCCGTCTACGACTTTTGCAAGCTGCAGTTAA
TGAATGCCTTCGGAGATCACGTTGGCAATCATTTCATCTCGAGCTTTATT
GCCAGTCTAGGCAGTGCCATTGCCTCAACGCCTATTGATGTAATCCGGAC
GCGCCTGATGAACCAGCGTCCCGTTAGCATAACAATGAATGGAGTGGTCA
CGGCAGCAGCCACACCAAAGCTGTATAGCGGCAGCCTAGACTGTGCTGTA
CAGACTATCAGAACGAAGGTCTACCCGCCCTGTACAAAGGTTTCATTCCC
ACCTGGGTGAGGATGGGCCCGTGGAATATCATATTTTTATTACCTACGAC
AACTAAAGAAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAGTGTCATAATCATATCATATCATATCATATCACAACTAGCTAGG
AGATCTGTCATGACTAGTGCCTGATCTCACATAAAACGCCGGCGCACGAA
CGTTCTGACCATCGATGATTCTGAGGTCTACTGATCTTCAAGGAATTCAA
GCGAATGATTC
UFO02233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bmcp-RB | 1687 | CG7314-RB | 192..1100 | 9..914 | 4470 | 99.7 | Plus |
Bmcp-RA | 1618 | CG7314-RA | 192..1100 | 9..914 | 4470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11722004..11722418 | 223..637 | 2075 | 100 | Plus |
3L | 28110227 | 3L | 11722588..11722807 | 698..914 | 950 | 98.6 | Plus |
3L | 28110227 | 3L | 11721316..11721464 | 75..223 | 745 | 100 | Plus |
3L | 28110227 | 3L | 11721125..11721192 | 9..76 | 340 | 100 | Plus |
3L | 28110227 | 3L | 11722465..11722532 | 631..698 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:30 has no hits.
UFO02233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:41 Download gff for
UFO02233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RB | 198..1114 | 1..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:37 Download gff for
UFO02233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 184..1100 | 1..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:30 Download gff for
UFO02233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bmcp-RA | 184..1100 | 1..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:30 Download gff for
UFO02233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11721117..11721191 | 1..75 | 94 | -> | Plus |
3L | 11721317..11721464 | 76..223 | 100 | -> | Plus |
3L | 11722005..11722418 | 224..637 | 100 | -> | Plus |
3L | 11722472..11722532 | 638..698 | 100 | -> | Plus |
3L | 11722589..11722807 | 699..914 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:37 Download gff for
UFO02233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11715689..11715907 | 699..914 | 98 | == | Plus |
arm_3L | 11714217..11714291 | 1..75 | 94 | -> | Plus |
arm_3L | 11714417..11714564 | 76..223 | 100 | -> | Plus |
arm_3L | 11715105..11715518 | 224..637 | 100 | -> | Plus |
arm_3L | 11715572..11715632 | 638..698 | 100 | -> | Plus |