UFO02234.5prime Sequence
1114 bp (1018 high quality bases) assembled on 2008-12-21
> UFO02234.5prime
CAGTCGACATGGCTTCCGAGCCGAGATCCCTAATTCTGCAATTGGACGAC
GACTGTCTGGCCGAGATTTTCGATCGCTTGCAGGACCTGCCGTCGGAAGT
GTCCTTCGCGAGGACTTGCCGGCGAGTGCAGTACATATGTCTGAGCAAGT
GGCGCACCAGCCATGCCTACGAGCAACTGGATCTGGAGAAGTGGCGGGTA
CTGTTGCCCAATCATGAAGACCTGGTCTACTTCCTAACCCAAATGCGTCC
GTACATCAGAGAAATGGGCGGCAGCAGCTGTCTGTGCTCCATTCTAAAAG
ATCTGGACGAAATGCACATTGCAGAGCTGCCCATGGTGACCAGCTTCTAC
TACGACCCAGACGGCGTCGATTGCTATCCCACGAACCGAAGCATCCGCAA
GCTGGCCCGCCTGCTGCCGGGCTTGAAAAAGTTGCGCCTTACCACACCCA
TCGACGGGCGGTACCTATCCAACTTCCAGCACCTGCAGGAGCTGCACCTC
TACGAGGACCAGCACAAGGCGTTTGAGCTGCAGCAGAAGTACCTGGACGA
GGTGTGCCGCACGCTGCACGATCTTCGGGTCCTGGACATTAGGACGTACG
ATATGATCAGTAAACTTCAGCTGGGAAACTGCCTGCAGAGCTTTAAGAAC
CTCACTGATCTTAAGCTCAATCTGGCCACCTTGAAACCCATTCTACCCGC
CGTTCTGGAGCTGCCCTCCCTCAGGAAACTGGTGGTGCTGCTGGACAACG
AGTGGCATATCCCCCCGCTGGTCAGTCCGGATAGCTATGACCACAAGATC
CGCGAGGTCAGCGAGTTCTACGAGATCATGGCTTTCAAGGCCAAGGACAT
CGTCGGCTTTGCCGTGACGGGTACTATATGCCCCTTGAACCGGGCTGGGA
TGAGAAGCTGCCATCTGGACGCATCGCAGCTGAGCGCTGGCATTTGCAGC
TGACTCATTCGCAGACTACCTAAGCGCTATACCTGTATGACAGAGCTGCA
GCTGCTCTGCGTGCGCAACTGATGACTTAGCGACGAAATCCTCTTTAGAT
CTGGACTCTTGTCCACGATGAACCCTCGACTGTCTATCTTGCGAATCTGA
CCGCCACACTTTGC
UFO02234.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7148-RA | 1594 | CG7148-RA | 157..1246 | 8..1080 | 4950 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21831546..21832097 | 559..8 | 2760 | 100 | Minus |
| 3L | 28110227 | 3L | 21830989..21831487 | 1045..559 | 1925 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:52 has no hits.
UFO02234.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:55 Download gff for
UFO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7148-RA | 103..1175 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:59 Download gff for
UFO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7148-RA | 151..1223 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:52 Download gff for
UFO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7148-RA | 151..1223 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:52 Download gff for
UFO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21830955..21831486 | 560..1075 | 95 | <- | Minus |
| 3L | 21831546..21832102 | 1..559 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:59 Download gff for
UFO02234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21824055..21824586 | 560..1075 | 95 | <- | Minus |
| arm_3L | 21824646..21825202 | 1..559 | 99 | | Minus |
