UFO02237.5prime Sequence
1113 bp (992 high quality bases) assembled on 2008-12-21
> UFO02237.5prime
CAGTCGACATGTCAGCGAGTGCAATTTATCGGCCATTTCCTAAAGTGAAA
CATTTTTGTATATTCCCGATCGCCATGGCCGGATCAAACCTGTTGATTCA
TCTAGACACCATCGATCAGAACGATCTGATCTACGTGGAACGTGACATGA
ACTTTGCCCAAAAGGTGGGCCTCTGCTTTCTGCTTTATGGCGACGACCAC
TCGGATGCCACCTACATTCTGCAGAAACTTTTGGCCATGACACGATCAGA
CTTCCCGCAAAGTGATCTACTCATAAAGTTCGCCAAGTCCCGGCCAGAAA
CCTGGAGAAGACATCTCGTGGAGGCCCTGTGCATTATTGGGGCCCGCAAG
GTGCTCCGGAGACTGGGTTTCTGCTGGCAGGAGCTGCGAATGCACTACTT
GCCGCATATCGCTGGGATCACGCTGCATGTCCATCCTCTGTTGAAGAGCC
TCTACAGGATGTGTGAGGAGTTGTCGTTGGTGCAGAGTGGCCGCTTGCTC
CTAGATGTTCGCGAAAAGGTGGAGAGCCAGCAGGCAGGAGATCCACTTCG
CTTCTACGATCCCGCGTACCTGGAGATCTTTTTGCTGGACTGGCTGACCA
GAAGGAGCATAAAGTTAGGGGACATAAATGCCGCAGGCAGCGATGTTCAG
CTGCTGGTCGGCCATTTGAAGTCCAACGGTCTGCAGGCGCAAGCAAATTT
GCTCAAAGACACCATCATTAGTAACGCTCCGGAGCCAGATGCGGCTGGCA
CTGCTGCGATGGCAGTCAAGCAAGAGATTGAATCGGATAACCAGCAGTCG
TACTGTTCCACACAAATAGATGCTTTTAAGTTGACCCGGGAGAACGCAGG
ATCGCCTTGATTATCAACCAGCAGAAGTTTCACCGGAATGTAGCAGGGAT
AATTTGGTTTCATCTCTGCATATGCAAGCTTTCTAGACCATTCGTTTGCG
CGCGGGCCCAGTAGTGTCATAATCATAATCATATCATATCATATCACAAC
TAGCCTAGAGATCTGTCATGACTAGTGCCTGGATTCTCACATAAAACGCC
CGCCGCACGACGTTTGAACAATCCGATGAGTTCCGAGGTCATACTGATCT
ATACAACGATCAG
UFO02237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dredd-RF | 1689 | CG7486-RF | 1..910 | 13..920 | 4470 | 99.6 | Plus |
| Dredd-RE | 1631 | CG7486-RE | 1..893 | 13..903 | 4400 | 99.7 | Plus |
| Dredd-RD | 1613 | CG7486-RD | 1..878 | 13..889 | 4350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 634532..635291 | 920..163 | 3670 | 99.5 | Minus |
| X | 23542271 | X | 635392..635549 | 166..9 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:23 has no hits.
UFO02237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:37 Download gff for
UFO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dredd-RF | 172..1094 | 1..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:33 Download gff for
UFO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dredd-RF | 1..912 | 13..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:25 Download gff for
UFO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dredd-RF | 1..912 | 13..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:25 Download gff for
UFO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 634532..635289 | 165..920 | 99 | <- | Minus |
| X | 635394..635554 | 1..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:33 Download gff for
UFO02237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 528565..529322 | 165..920 | 99 | <- | Minus |
| arm_X | 529427..529587 | 1..164 | 97 | | Minus |
