UFO02239.5prime Sequence
1128 bp (990 high quality bases) assembled on 2008-12-21
> UFO02239.5prime
CAGTCGACATGAATCCCTGCCATGTGTGCGAGGAGCCGACGAAGAACAAG
TGCTCCAACTGTAACCAGGTCTCCTACTGCAGTGTCCAGCACCAGAAGCA
GGACTGGAAAGTGCACAAGCCAAGCTGTCATCCATTCAAGATCGCCCACA
ATGAGCAGCTGGGCCGGCATCTGGTGGCCACCCGCACCATTAAACCATAC
GAGATAGTCCTGAAGGAGGCGCCTCTGGTCCGGGGACCAGCACAGATCTC
CGCACCCGTTTGCCTGGGCTGTTTGAACGGCATCGAGGCGGAGGATCACA
TCGAGTGCGAGCAGTGCGGTTGGCCGCTGTGCGGACCGGAGTGCAAGTCC
CTGGATGAGCACAAGGCGGAGTGCGGTCTGACCAAGGATCGGGGTCAGAA
GGTTAATGTGCAGGAGTTCGGTGGACCACATCCCCTGTACACGTGTTTGA
GCACCGTAAGGTGCCTGCTGATTGGCGAAACAAGTACGGAGAAGGCCAGC
AAGTTCCAGGACCTGGAGTCACTGGAGTCCACCAGAAGGGGGTCCAACCA
ATGGAAGGCGGATCTGGTCAGCATCGGGCAGTTTATTCCAAAGTTCTTTA
AAACACAGAAGTTCACCGAGGAGGAGATTATGAAAGCAGTTGGTGCTCTG
CAAATAAATGGACACGAGGTGCCCACCACTGATCCATCTCATGTAGCGGT
CTTTTATACCGCCTCCTTTACGGAGAACTCCTGCCTGCCCAATCTGGCCA
AGAGCTTCAACAAGAACGGACACTGCATCCTCTGGGCACCGCGCGAGATC
AAGAAGAACGCCCACCTGAGCATCTGCTACTCGGACGCCATGTGGGGCAC
CGCCGATCGCCAGCGCCACCTGATGCAGACAAAGCTGTTCAAGTGTGCCT
GCGAGAGATGTGTGGATGTCACCGAGTTGGACACCAACTACAGCGCTATT
AGTGCGAGGATCGCCAGTGCGGCGGATTGATGCTGCCCACCAGCGACGAT
GTACGGCAGTTGGCGCCTGTTCGCGAGTGCCACAGCAGTCAGAAACACTA
TGTGGAACCGCATTTGGACGGGCTGCAAGACATTCAGCATGGAAGAAATC
GCTGAAATGATAAATACCTCAGCATACG
UFO02239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8503-RA | 1774 | CG8503-RA | 160..1271 | 8..1107 | 5100 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14244126..14244581 | 139..594 | 2280 | 100 | Plus |
| 2R | 25286936 | 2R | 14244842..14245242 | 593..992 | 1955 | 99.8 | Plus |
| 2R | 25286936 | 2R | 14243937..14244069 | 8..140 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:00:10 has no hits.
UFO02239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:36 Download gff for
UFO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 242..1385 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:47 Download gff for
UFO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 151..1294 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:38 Download gff for
UFO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8503-RA | 151..1294 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:38 Download gff for
UFO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14243928..14244069 | 1..140 | 97 | -> | Plus |
| 2R | 14244128..14244579 | 141..592 | 100 | -> | Plus |
| 2R | 14244842..14245270 | 593..1015 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:47 Download gff for
UFO02239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10131433..10131574 | 1..140 | 97 | -> | Plus |
| arm_2R | 10131633..10132084 | 141..592 | 100 | -> | Plus |
| arm_2R | 10132347..10132775 | 593..1015 | 98 | -> | Plus |
