UFO02241.5prime Sequence
1091 bp (974 high quality bases) assembled on 2008-12-21
> UFO02241.5prime
CAGTCGACATGGACACCTATTTGTTTGATGGCGGCCGCATCACCAAGATG
GAGGTGGACTACGAGCCGGCGTGCAACGAGAAAATCCCCCTGGCTAAGGA
GCTGGCCAAGAAAAACCCCGACGCCTTTCACGAAGCCATCGAGATGATGC
TACAACTGGAGAAGCAGACGCGCCTGGGCGCCGACATGGTTTCTTGCTCA
CGAGTCCTGGTTGCCATCTGTCAGATCTGCTTTGACGCGTCCAACTGGAA
CGCCCTCAACGAGTACGTGTCTCTGCTGGTACGCCGTCGCTCCCAGCTGA
AGCAGGCTGTGGTCAAGATGATCCAGGAGTGCGTCACGTACGTGGACAAG
ACGCCCGACAAAGAGACTAAGCTGAAGCTTATCGACACACTTCGCTCGGT
TACCGAGGGCAAGATTTACGTTGAGATCGAGCGGGCCCGTCTTACTAAGA
TTCTGGCGGACATTAAGGAAGCCGATGGCGATGTCGCCGGAGCTGCCACT
GTCATGGAGGAGCTTCAAGTGGAGACTTATGGCTCGATGGATAAGCGCGA
GAAGGTGGAGCTCATCCTGGAGCAGATGCGCCTTTGTCTGTTGAAGGAGG
ATTACGTATCCACGCAGATCATTGCCAAGAAGATCAGTATAAAGTTCTTT
GACGATCCGGCACAGCATGATCTGAAGCTGAAGTTCTACTATCTAATGAT
TCAGTTGAACAGAGACACCTCCTTCCTGAATACTTCGCGCCATTATCACG
CCATAGCGGAGCCTCCGCGCAAGAAGACTGGCCTTACACCCGTAGACTCT
GCCGCGTCCACGGATGAGCAAAAAGACGATGACGATAGAAAAAGAAGGAG
GAGATGACAGGATAGAGCCAGAGTTGCTACAGAGCTGAGTCGAAATTGAC
TTACCGAGGAGCAGAGAGACTGACGGAAAGCTGGTTGTGCCGTGCTTTAT
TGCGTTTAGCTCCCTTCGACACGAAAGAGCGACATGATGGCACATCTTTC
GAAGAACAGAAGCTGAGACTGCCGCTATAGAATCTGCGCTGTCATGTCAG
GACTGATCACTCCAACCATTTAATGCAACTTGGCTCGGTGG
UFO02241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn5-RA | 1897 | CG1100-RA | 225..1253 | 9..1015 | 4585 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5789776..5790796 | 9..1008 | 4175 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:38:58 has no hits.
UFO02241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:35 Download gff for
UFO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 225..1259 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:36 Download gff for
UFO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1255 | 1..1018 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:15 Download gff for
UFO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn5-RA | 221..1255 | 1..1018 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:15 Download gff for
UFO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5789772..5790806 | 1..1018 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:36 Download gff for
UFO02241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1615494..1616528 | 1..1018 | 97 | | Plus |
