UFO02242.5prime Sequence
1122 bp (979 high quality bases) assembled on 2008-12-21
> UFO02242.5prime
CAGTCGACATGGCCACCCTCCTCAGCAACGGACAGCAGTCGGTAATGGCC
AGCACCAGTAATGGTCAGGAGCAGCAACGGCACCAGGACGAACCGGAGCA
GCAGCAGCAGGTCGAGATCAGAAAGTCGAGCTCACCGAAACCAGGCGCCA
TGCCCAGCTTGAAGCTGAACAGAATGGGTTCGGTGTCACCGAAAGATAAA
CGAGTCTACAAAATCGTCCTCACTGGCGGGCCTTGCGGCGGAAAGACGAC
GGGACAGTCCCGCTTGTGCACTTTCTTCGAAAACCTTGGATGGAAGGTAT
TCCGCGTGCCTGAAACGGCCACTGTTTTACTCAGTGGCGGTGTGAAGTTC
TCCGATCTGACCGAGAAAGAGGCCTACAAGTTCCAGGAGAATCTGATCCG
CACCATGGTTCAAATTGAGAACACCTACTTTGAGCTGGGCAACTCCAGCA
ATCGCAACTGTCTGATAATCTGCGATCGCGGCGTTATGGATGCCAGTGCA
TACATATCCAAGGATAAATGGGAAAAGATGATGGCGGGCAATAATTGGAA
TCCCGTGGAGATGCGCGACAATCGTTACAACCAAATCCTGCACTTGGTTT
CGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGACCATGCCTGT
CGCTCGGAGGGCGTTGATTTGGCCCGGGAACTGGACTACAAATCCGCCGC
CGCCTGGGTTGGCCATCCCTACTTCGATGTGATCGACAACTCCACCAACT
TCGAGACCAAGATGAATCGCATGATTGAGTCGGTGTGCCAGAAATTGGGC
ATTGATATTGGCGACCGTTTGCAGCCACGTCGCGCAAGCTGAATATTTGG
TGGCCCTTTTGCCGCCGGACAGCGAGTTTCCGCCCTTCCAGGATTTCGAT
GTCGTACATCATTATCTGCAGTCCGCGGACCCAAGTGCAGCTCGCATCGC
AGCGTGAAGAGACCACTGGAGCTACATCCACACGCAGCGCGTCAAACGTC
ACGGCAGCCGCATGAGGTGAGACAGCTGACGCATCTGACTACTGAACTGC
TGCAGCCGACATGCTCACTCACACTCCAGAGGCGCGCTGCTTCTATAAAC
CAAATTCAGCTGATTAAGGACA
UFO02242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30118-RB | 2030 | CG30118-RB | 519..1611 | 6..1069 | 4765 | 97.1 | Plus |
| CG30118-RA | 2317 | CG30118-RA | 519..1611 | 6..1069 | 4765 | 97.1 | Plus |
| CG30118-RC | 2584 | CG30118-RC | 1017..1743 | 372..1069 | 2935 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18439734..18439957 | 229..6 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 18431817..18432024 | 843..637 | 990 | 99.5 | Minus |
| 2R | 25286936 | 2R | 18432444..18432586 | 639..497 | 700 | 99.3 | Minus |
| 2R | 25286936 | 2R | 18432647..18432776 | 501..372 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 18431671..18431747 | 926..850 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 18438206..18438276 | 298..228 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 18437575..18437614 | 372..333 | 200 | 100 | Minus |
| 2R | 25286936 | 2R | 18437940..18437979 | 334..295 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6807 | 23..109 | 135 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6819 | 50..109 | 135 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2862 | 15..117 | 134 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6858 | 23..109 | 133 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2363 | 29..110 | 132 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2460 | 23..148 | 127 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6877 | 50..144 | 126 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1146 | 23..109 | 125 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2825 | 49..110 | 118 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6765 | 66..109 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2360 | 23..110 | 111 | 63.3 | Plus |
UFO02242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:33 Download gff for
UFO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30118-RA | 521..1598 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:28 Download gff for
UFO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30118-RA | 515..1592 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:17 Download gff for
UFO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30118-RA | 515..1592 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:17 Download gff for
UFO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18431809..18432022 | 639..850 | 99 | <- | Minus |
| 2R | 18432445..18432581 | 502..638 | 100 | <- | Minus |
| 2R | 18432647..18432775 | 373..501 | 100 | <- | Minus |
| 2R | 18437575..18437612 | 335..372 | 100 | <- | Minus |
| 2R | 18437940..18437977 | 297..334 | 100 | <- | Minus |
| 2R | 18438208..18438275 | 229..296 | 100 | <- | Minus |
| 2R | 18439735..18439961 | 1..228 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:28 Download gff for
UFO02242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14319950..14320086 | 502..638 | 100 | <- | Minus |
| arm_2R | 14320152..14320280 | 373..501 | 100 | <- | Minus |
| arm_2R | 14325080..14325117 | 335..372 | 100 | <- | Minus |
| arm_2R | 14325445..14325482 | 297..334 | 100 | <- | Minus |
| arm_2R | 14325713..14325780 | 229..296 | 100 | <- | Minus |
| arm_2R | 14319314..14319527 | 639..850 | 99 | <- | Minus |
| arm_2R | 14327240..14327466 | 1..228 | 98 | | Minus |
