UFO02243.5prime Sequence
1135 bp (1028 high quality bases) assembled on 2008-12-21
> UFO02243.5prime
CAGTCGACATGTCGAAATTTCACACCCTTATGGGCGCACTGTTTGACCCC
TTCCTCTTTGTTCTCCGCCTGATTGCAAACATGAGTTCCCCTATCTACGA
GCAATATCGGTTCGGGCCGTCACGTCCCCTCTCCGCTGGATCACGTACAC
TGTGGAAGCCAAACAAGGTGCATCAGGAGGCACCCGAGGTCAAACCGCTC
GAAGTCCCCGAGGATTTGCGGATCCCAACCCTGCAGCCAGACCCCCTGAA
TCCGCTGGCCACCATGATGTCTTTCAAGCTAATGGCTATGGACGTAGTAA
CTCAAATGCAGACCGCCCTGCACAAGTGCGTCAACGCCCAGAGTCCGCCG
GGCGCCAAGATGGCGGGAATCGAGTTGGACGCCTTGCGGCGTTGCGTACC
GTCCTCGTGCTACTTCTTTATTGACCTGCATCCGCACCACGGCTTTAAGG
ATACCGCGGAGGATTGCCCTACTAGTCAAGCCTCCAGTGACCGGAATAAC
AACGCTGGCTGTTCGCAAGGATCGGCTGCCAAGAGCTCCTGGCAGCGGCA
GCGTAGTATTTCCGAGTGCAGTGAGGACAGCTTCATTTGCTTTGAGGACG
ACGCAGAGCAGGCGGATGAGGATGTCGAGGAAGACGAGGATGATGATGAC
GACGACAGCAGCGTGCAGTTTACAGCATGCGGTGAGGATGAAAATACCGA
GGAGCTAAAGGCCTGCCAGTGCAGCGACGACAGCTCGACTCCTGTCAAGA
AGGTTCGTTTCAACATGAAACCCGAAGTTCACGTAATGCTCGCCTGGGAC
TACGCTTATCGGGCTGCCAGAAAGAGCGAATGGCAGTAATGGCGCGAGAT
CGGGATCGCTTTCAGCAGCGGATTCGCGGATTTCACCCATTCTCATGCCG
TCCTGACTCCAGTTCACCGAGATCGTGTCTACCAAGCTCGATTCTTGCAC
GAGACGCAAGCTTTCTAGACATTCGTTTGGCGCCGCGGGCCCAGTAAGTG
TCATAATCATATCATAATCATATCATATCACACTAGGCTAGAGATCTGTC
ATGACTAGTGCTGATCTCACAATAAAACGCCTGGCGGCCACGACGTTCTG
GACAATCGAATGAATTGGAGCTTAACTGAATCATA
UFO02243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gadd34-RA | 1597 | CG3825-RA | 365..1312 | 9..953 | 4665 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23976146..23976891 | 754..9 | 3730 | 100 | Minus |
| 2R | 25286936 | 2R | 23975884..23976089 | 953..751 | 880 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:46 has no hits.
UFO02243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:32 Download gff for
UFO02243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3825-RA | 380..1343 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:50 Download gff for
UFO02243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 357..1320 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:18 Download gff for
UFO02243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gadd34-RA | 357..1320 | 1..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:18 Download gff for
UFO02243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23975876..23976087 | 753..962 | 96 | <- | Minus |
| 2R | 23976148..23976898 | 1..752 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:50 Download gff for
UFO02243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19863399..19863610 | 753..962 | 96 | <- | Minus |
| arm_2R | 19863671..19864421 | 1..752 | 99 | | Minus |
