UFO02244.5prime Sequence
1109 bp (979 high quality bases) assembled on 2008-12-21
> UFO02244.5prime
CAGTCGACATGGCAGGAGTAAGTCAAGCTGATATCGAGGAGTTGTACAAC
TTTATCCATCCCCTGGCCATCAAAGCGGGCGAGATCCTCATGGAGGGCTA
CGAGATGGCCAGTAAAAACGTCTCAATCAAAGGCGATTTCTACGACGTGG
TCACCGACTACGACAACAAGATTGAGGACTTTCTCATGGAGAAAATATTG
GCCAGATACCCGGATCACAAGTTCATCGGCGAGGAGGAGACGGCTAAGAA
CAACAACGTGTCCGGAGAGCTGACGAATGCTCCCACCTGGATCATAGATC
CCATCGATGGAACTTCGAACTTTATCAAGCAGATTCCACACGTTTGCGTT
TCAATCGGTTTGGCAATCAACAAACAAATCGTAGTGGGAGTAATCAACAA
TCCTGTCCAGAAAAAGCTCTTCACAACGAAACTGGGCCAAGGCGCCTTTT
GCAATGGCAAACCAATCCACGTGAGCAGCTGCGAGAGCGTTAAGGATGCC
AATGTGGCCTACGAAGTGTCCCTGCTGCATGTCCATTCGGTGGCCAACAA
GCATATCAAAAGGATCTACCATGTGGGATTGAATGCTAGACGACTTGTTG
CCTACTCCTGTGTGGTGGATGAGCTGTGCATGGTGGCCGCTGGCAATCTG
GATGCCTTCTACATTGAGGACATGTATCCCTGGGATTGTGCCGCCGGCTC
CCTGTTGGTTAAGGAGGCGGGAGGCGTGGTAACACATCCCTTTGGCGGAC
CATTCGACATAATGAAGCCGGATCTAATCTGCGCCGGCACAGAGAAGTTG
CGCAAGGAGATCGAAGACCTTCTGCGTAAGGAGACCAGGAGGAGTCCGTG
GGAGGAAAGCCGGTGCAGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAGTGGTCATATCATAATCATATCATAATCATATCACACT
AGCTAGGAGATCTGGTCATGACTAGTGCTTGATTCCCCACAATAAAAACG
CCCGGCGGCAACGAGCGTCTGAACAATCAGAATGAGTTCTGAGGTCATTA
CTGAATCTATCAACGGGTTCAGGCGAGCTCGAATATCCAATACGCTCGCC
TGCCATCTA
UFO02244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17027-RB | 1558 | CG17027-RB | 271..1134 | 9..871 | 4280 | 99.8 | Plus |
| CG17027-RA | 1362 | CG17027-RA | 75..938 | 9..871 | 4280 | 99.8 | Plus |
| CG17026-RA | 1004 | CG17026-RA | 232..877 | 150..795 | 1085 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15980370..15980953 | 9..592 | 2920 | 100 | Plus |
| 3L | 28110227 | 3L | 15981184..15981464 | 592..871 | 1340 | 99.3 | Plus |
| 3L | 28110227 | 3L | 15975599..15976039 | 150..590 | 735 | 77.8 | Plus |
| 3L | 28110227 | 3L | 15976117..15976301 | 611..795 | 355 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:45 has no hits.
UFO02244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:30 Download gff for
UFO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17027-RA | 408..1286 | 1..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:42 Download gff for
UFO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17027-RA | 68..946 | 1..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:24 Download gff for
UFO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17027-RA | 68..946 | 1..883 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:24 Download gff for
UFO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15980363..15980953 | 1..592 | 99 | -> | Plus |
| 3L | 15981185..15981472 | 593..883 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:42 Download gff for
UFO02244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15973463..15974053 | 1..592 | 99 | -> | Plus |
| arm_3L | 15974285..15974572 | 593..883 | 97 | == | Plus |
