UFO02246.5prime Sequence
1101 bp (995 high quality bases) assembled on 2008-12-21
> UFO02246.5prime
CAGTCGACATGCTCATCCGCCTGCGCTATGGAAGACGCCTGCAGACCTAT
CTGAAGATAGGCGCCTGTGTCCTGGTCGGCCTGTGCTACTTCGCCTTCCT
TTTCCGCGAATCCCTCAATGCATACGAGCACCGGGAGCGGGCTACGGCCG
CGGAATTGGAGGCGGAATCGGAGCCATCAAAGCAGCAGCTCAAGCTAAAG
CGGCAGCAGTTGCAGCGCCAGCGGATATTGGCCAAGCAGCAGGAGCAGGG
AAAGGGCATCGCTGGGGGAAATGCCAGTGCAGGCAGCTCATCCTCCCAAG
CAGCAGCTCCTCCGCCGCCGCCGCCGGCTACCACCCTGAATCCCGTGTAT
GAGTACTCCGAGGAGCTGCACAGTCGCACGGAGCGGGAGCTGCAGAGGAG
GAGCGAGCATCTGGCCGCCGTCTGCGATCGGTATAAGCTGCAGGAAAAGT
ACCCACCGAATCCCTGGGAGTTCTTCGTCTCGCCTGGCCACAACAATCTC
GTCTGGTGCAACGTCTTCAAGGCGGCCAGCAGTACGTGGATGTATTACTT
TAATATATTAGCTGGCTACGATGTGAAGTATCTGCAGCGCACGGAGACGC
AGCCACTGGAGCTGGCCAGAAAGCGTTTTCCACGCCCGGAACTGGGCGAA
CTGATGGAGCTGCTGCCCAGTGCGCTGTCCTTTCTCTTTGTGCGCGATCC
CTTCGAGCGAATCCTGAGCGCCTATCGCAACAAACTGGAGGGCAACAAGA
ACACCTTCTACAAGGCGCTGGGCAACAAGATCGTGCATCGCTACAGGAAG
CGTAATCTGGGCGGACCCTGGCCGCGATGTGGACCCACCTTCGAGGAGTT
CGTCCGCTTCCTGATCGCCGAGCATGCGGCGGGCAAGAGATTCGACGAGC
ACTGGGCACCAGTTTACAGCTTCTGCACGCCCTGCAGCGTTACTTCACAT
CATCGGCAGACGGAGACGTTCAGAGGGACTCGGAGTTCATCATACGCAGC
GGCTGAATCGCTGCTCTGGGACTGACAGCTGCCGCAGCGGAGCAGCGCAA
TGCAACAAGCCGCGGAGTGGCGTATCGAAGCTGTCGAGGAAACCTCCCGA
T
UFO02246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14024-RB | 2616 | CG14024-RB | 283..1364 | 9..1073 | 4955 | 98.1 | Plus |
| CG14024-RA | 1798 | CG14024-RA | 283..1364 | 9..1073 | 4955 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5313386..5313884 | 507..9 | 2495 | 100 | Minus |
| 2L | 23513712 | 2L | 5312653..5313093 | 996..560 | 2005 | 99.1 | Minus |
| 2L | 23513712 | 2L | 5313269..5313325 | 561..505 | 285 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10363..10463 | 216..311 | 115 | 60.4 | Plus |
UFO02246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:40 Download gff for
UFO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 267..1329 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:37 Download gff for
UFO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 271..1333 | 1..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:15 Download gff for
UFO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14024-RA | 277..1339 | 1..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:15 Download gff for
UFO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5312588..5313091 | 562..1055 | 96 | <- | Minus |
| 2L | 5313269..5313324 | 506..561 | 100 | <- | Minus |
| 2L | 5313388..5313890 | 1..505 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:37 Download gff for
UFO02246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5312588..5313091 | 562..1055 | 96 | <- | Minus |
| arm_2L | 5313269..5313324 | 506..561 | 100 | <- | Minus |
| arm_2L | 5313388..5313890 | 1..505 | 99 | | Minus |
