UFO02251.5prime Sequence
1139 bp (1007 high quality bases) assembled on 2008-12-21
> UFO02251.5prime
CAGTCGACATGGCCGACGATTGGGAATCCGCAGCAGACAGCGAGGTGGTC
ATCCGGCCGACTGCCGCCGCCAGCGTAAACAAGTGGGAGGGCGAGGACGA
GGATGAGGACATCAAGGACAGCTGGGAGGATGAGGAGGAAAAAAAGGACG
AGGAGAAGCCTACGAAAACAGAAGCACCAGCCAAACCGAAGCCAAATAAG
GCGCTAAAAGCCAAACTGGAACAGCAGGCGCTCCTAGAGGAGGAAGCGGA
GGCAAAACGTTTGGCCAACCTATCGCCTGCAGAAAAGTTGGCTGAGAAGC
TGCGATTGCAAAAAATCCAGGAGGCCTCTGATCTCAAGCATGCCCAGGAA
GCGTTCGGTGTGACGAGTACGTGCGGAGGTCTTGACGCCTTCAACCCCGA
GACCAAGGAGGAGTTCAAGGAATTTGGCGCAACGCTCAGCTGGAAGGTGG
GCCAATTCCGCGAGTCGGAGCACTTCCCCCAATTTGTTGAGGATCTGGTG
CGCAGCCTATGCGTGAATCTGAGCGCTGCTGACATCAAAAAGGTCAAGAT
GAACGTGGAAATCTTGCACTCGGAAAAGCTGAAGCTGGAAAAGGCCAATG
CTAAAAAGCCCGCTGGAAAGGGCAAGGGCAAGGTCACTCTCCGCACCGAA
AACGACGACATTGACGGTTACCAAAAGTACGGAAATGACTTCACCGAAGA
CTATGACGACTTCATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAATT
TACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTATTCATTAGCATTCT
TGCGACATGCAGCCATCCAAACGCATGATGACTGATCGCAGGCGGCATCA
GCAACTTGTCGCTGCGTATAATATTTGCAATGTGAACGGGGGCGAGAGTT
GTCCAATTGCAGTATCGACTAGTACTCACAGAATGCTGA
UFO02251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adam-RB | 1228 | CG12131-RB | 155..864 | 7..716 | 3550 | 100 | Plus |
| Adam-RA | 1363 | CG12131-RA | 290..999 | 7..716 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9969918..9970207 | 230..519 | 1450 | 100 | Plus |
| 2R | 25286936 | 2R | 9970272..9970409 | 520..657 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 9969739..9969854 | 115..230 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 9969460..9969553 | 24..117 | 470 | 100 | Plus |
| 2R | 25286936 | 2R | 9970474..9970533 | 657..716 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:42:28 has no hits.
UFO02251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:23 Download gff for
UFO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adam-RA | 254..972 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:54 Download gff for
UFO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adam-RA | 285..1003 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:23 Download gff for
UFO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adam-RA | 285..1003 | 1..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:23 Download gff for
UFO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9969741..9969854 | 117..230 | 100 | -> | Plus |
| 2R | 9969461..9969552 | 25..116 | 100 | -> | Plus |
| 2R | 9969919..9970207 | 231..519 | 100 | -> | Plus |
| 2R | 9970272..9970408 | 520..656 | 100 | -> | Plus |
| 2R | 9970474..9970537 | 657..720 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:54 Download gff for
UFO02251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5857246..5857359 | 117..230 | 100 | -> | Plus |
| arm_2R | 5857777..5857913 | 520..656 | 100 | -> | Plus |
| arm_2R | 5857979..5858042 | 657..720 | 96 | == | Plus |
| arm_2R | 5856966..5857057 | 25..116 | 100 | -> | Plus |
| arm_2R | 5857424..5857712 | 231..519 | 100 | -> | Plus |
