UFO02252.5prime Sequence
794 bp (648 high quality bases) assembled on 2009-01-13
> UFO02252.5prime
CAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCATGGCCATG
GCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTGTTGGTTCC
GCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTCGGCTTTAA
GTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAGCTAGTGTC
AAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTGCGAAGAGC
GGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACTGGCATCTC
GATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTGCAGCGGCC
GTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGTGTGGTGCG
AATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTGCGATCAGA
AAGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATGATGGCAGT
GAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTCGGCCACTA
ACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGATTACGAGCAG
TGACACTTTGAGCTTTTGGTTCAGCTGCAGAATCGAAAGCAGGAGCTGAA
GATTTGCCCTTTTTGATCACTTTAGCATCGGCAGTGAATCGGACAGTATC
GTCTGAATTTTCTTGGGGGAATTATCCCGGGATTCTGCGATGCATTGCGT
GACCCACCGGGAAGATTCAGTACCCCGATAGGGTTAATGATGAA
UFO02252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-RC | 1223 | CG1889-RC | 110..901 | 9..794 | 3535 | 97.2 | Plus |
| CG1889-RA | 1468 | CG1889-RA | 110..901 | 9..794 | 3535 | 97.2 | Plus |
| CG1889-RE | 1227 | CG1889-RE | 110..905 | 9..794 | 3485 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9965837..9966332 | 305..794 | 1790 | 94.4 | Plus |
| X | 23542271 | X | 9965585..9965770 | 119..304 | 930 | 100 | Plus |
| X | 23542271 | X | 9965350..9965460 | 9..119 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:09 has no hits.
UFO02252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:22 Download gff for
UFO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RC | 110..899 | 9..792 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:49 Download gff for
UFO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RA | 110..901 | 9..794 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:33 Download gff for
UFO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RA | 110..901 | 9..794 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:33 Download gff for
UFO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9965350..9965460 | 9..119 | 100 | -> | Plus |
| X | 9965586..9965770 | 120..304 | 100 | -> | Plus |
| X | 9965837..9966332 | 305..794 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:49 Download gff for
UFO02252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9859383..9859493 | 9..119 | 100 | -> | Plus |
| arm_X | 9859619..9859803 | 120..304 | 100 | -> | Plus |
| arm_X | 9859870..9860365 | 305..794 | 95 | | Plus |
