UFO02253.5prime Sequence
1105 bp (989 high quality bases) assembled on 2008-12-21
> UFO02253.5prime
CAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCCCGACCGGA
GGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACACCAGCCGC
AGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAAAACCACAT
TCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCGGAGATGCA
GACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGCCTGGGATC
CGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGCCGCAAATC
CAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTGCTCCTCCC
GCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTGCCAACTAT
AGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATTGCTGGGCG
GGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCACAACTCTG
ACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCACCGGCCCC
AACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGAAACCAAGA
CCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTCCTACCACCAA
CTTGAGGAGCATATCAACAAGTGGACTCTCGAGTTCGAGGAACAGGAAAA
GGTATTCACCGAACAGGCCACTCAGATCAACGCATGGGACAAACTGCTCA
TCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGTGAAAAAGTGA
AAACCGATCAGCAAGTGCTGGACCAGGAGCTGGAGTTTATAGCCACGCAG
CAAAAAGAGCTTGAGGACAGCCTGGGACCGCTTGAGAGGATTCGTTAATC
TCCCGAGGGGGGACATGGACGCAGCCAAACCTACCTGATGGTGGAGATCT
GGACACACACTGAGCAGATGTCCGAGGATCTAAGGAGATATAGACACTTG
ACGAGGCAACAGGGCCAGGACCCACTGATCCATCTACGATCGGAAATCTT
ATGCCATTGATCGTGCATGAATCGATCCGATCGAGACATCACAGAAGCTG
GAGAC
UFO02253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup62-RB | 1345 | CG6251-RB | 97..1152 | 8..1046 | 4840 | 98.3 | Plus |
| Nup62-RA | 1452 | CG6251-RA | 204..1259 | 8..1046 | 4840 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16344580..16345562 | 8..983 | 4570 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:38 has no hits.
UFO02253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:21 Download gff for
UFO02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1259 | 8..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:21 Download gff for
UFO02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1259 | 8..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:36 Download gff for
UFO02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1259 | 8..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:36 Download gff for
UFO02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16344580..16345635 | 8..1046 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:21 Download gff for
UFO02253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12232085..12233140 | 8..1046 | 98 | | Plus |
