UFO02254.5prime Sequence
1097 bp (973 high quality bases) assembled on 2008-12-21
> UFO02254.5prime
CAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCAGTCGATTG
GCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCCCAGCACTC
AATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCCCACGCAAT
TTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGTACTCGCAG
CCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAACTCGCTGCT
CCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAAC
AGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGCAGCAACTC
CTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCAGGAGTGGG
CGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCAGATGCACG
CCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGCAGCAGCAG
CAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTATCCGGCGG
CCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCAGATAGCTG
CTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCACAGAACGCA
GCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAATGGCCTGCA
GCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCCAGTAAGAG
GAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAGCGCCTTTG
CGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTACTCCACGCA
ACAGCACATGGGCTTCATGCAGCAGCAGCAGCAAGACGTGCTCCGTGACC
AGCAGCAGTCGGTGGACCATCAGTTCGCCACAGCCAGTTTGCGCCACCAC
CGCAGAAGCTATGGGATGCCGTTCCATGTCTCGTGCTGGGATCCCCCACT
ACAGCAATCGCGGACGTCTCTCATGTGAGCTTCTCAAGCGGCAATCTCAC
TAACGCTCGAGCCTTCCTAGAGCATTCGTTTGGCAGCGGCAGGTATG
UFO02254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-RC | 1382 | CG32548-RC | 173..1224 | 8..1049 | 4920 | 98.6 | Plus |
| CG32548-RB | 1475 | CG32548-RB | 393..1317 | 135..1049 | 4285 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18435877..18436801 | 1049..135 | 4060 | 97.9 | Minus |
| X | 23542271 | X | 18437002..18437128 | 134..8 | 635 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2390 | 848..908 | 115 | 69.4 | Plus |
UFO02254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:20 Download gff for
UFO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1233 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:28 Download gff for
UFO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1233 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:21 Download gff for
UFO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1233 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:21 Download gff for
UFO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18435868..18436801 | 135..1057 | 98 | <- | Minus |
| X | 18437002..18437136 | 1..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:28 Download gff for
UFO02254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18329901..18330834 | 135..1057 | 98 | <- | Minus |
| arm_X | 18331035..18331169 | 1..134 | 97 | | Minus |
