UFO02255.5prime Sequence
1036 bp (868 high quality bases) assembled on 2009-01-13
> UFO02255.5prime
CAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGTCCCGTGGT
GCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAAGGTCACGG
TCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCGTTTGATTC
TGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTATGAAAGAG
GCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGACATCAACCA
AGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCGCACCAAGA
AGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCTACCAGGAC
GGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGTCAGCAGCT
GGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCTCGTGGAGC
TGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGATCAAGATC
ACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCCCGAATCGA
TAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGAGCGTGAGG
AGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGGCACGCATC
AAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGCATCGATGTGCGC
CAGCAGCCAATATCCTGGATGAGGGCGATGACGACGTGCTGTTCGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCAT
AATCATATTCATAATCATAATCACAACTAGCCTAAGAGATCCTGGTCATG
ACTAGTGGCTTGGATTCTCACCATAAAAACGCCCGGCGGCCACCGGACCG
TTCTTGAACAAATTCAGATGGAGTTTCTGAGGTCATTACTGATTCTATCA
ACAGGAGTCCAGCGAGCTCGATATCAATTACGGCGCTGCAATCTACGGAG
ATACTGTTTGATTTCATTAAGCATTCTGCCGACTGG
UFO02255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha36-1-RA | 1064 | CG8186-RA | 103..840 | 9..744 | 3640 | 99.7 | Plus |
| Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 36..648 | 1430 | 82.2 | Plus |
| Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 36..648 | 1430 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15541537..15542274 | 9..744 | 3590 | 99.7 | Plus |
| X | 23542271 | X | 2579579..2579942 | 529..166 | 860 | 82.4 | Minus |
| X | 23542271 | X | 2579996..2580112 | 167..51 | 285 | 82.9 | Minus |
| X | 23542271 | X | 2579399..2579516 | 648..531 | 275 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:15:36 has no hits.
UFO02255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:21 Download gff for
UFO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-RA | 114..867 | 1..756 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:22 Download gff for
UFO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-1-RA | 96..849 | 1..756 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:58 Download gff for
UFO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-1-RA | 96..849 | 1..756 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:58 Download gff for
UFO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15541530..15542283 | 1..756 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:22 Download gff for
UFO02255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11429035..11429788 | 1..756 | 98 | == | Plus |
