UFO02257.5prime Sequence
1130 bp (1029 high quality bases) assembled on 2008-12-21
> UFO02257.5prime
CAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCCACGGCGAG
TCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCT
CAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGCCGTCAAGG
ATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGACCCGCGCC
CAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAGGAGATCCC
CATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGGACTCACTG
GCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCCAGGTGCAG
ATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAGCCGGGCCA
TCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGAGGGTCCCA
AGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCATCGAACGC
ACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAGGAGGGCAA
GCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCATCGTCAAGC
ATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATCTGCCCACG
GGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCGGTGGTGTC
CATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGCCATCGAGGCTGT
GGCCGCCCAGGGCAAGGCCAAGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCACAGGAGTCAGCGAGCTCGATATCA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTTGTTATTCATAGGCATT
CTGCCGACTGAGCATCACAAACGGCATGGATGAACTGATGCAAGCGCATC
AGAACTGGTCGCGTTGCCTAAATTTGGCAT
UFO02257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pglym78-RC | 1042 | CG1721-RC | 109..873 | 9..772 | 3800 | 99.9 | Plus |
| Pglym78-RB | 1022 | CG1721-RB | 89..853 | 9..772 | 3800 | 99.9 | Plus |
| Pglym78-RA | 1136 | CG1721-RA | 203..967 | 9..772 | 3800 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29149008..29149506 | 111..609 | 2495 | 100 | Plus |
| 3R | 32079331 | 3R | 12231802..12232560 | 772..15 | 1165 | 77.2 | Minus |
| 3R | 32079331 | 3R | 29149569..29149732 | 610..772 | 770 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29148450..29148554 | 9..113 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:38 has no hits.
UFO02257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:19 Download gff for
UFO02257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym78-RC | 62..839 | 1..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:36 Download gff for
UFO02257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym78-RA | 195..972 | 1..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:20 Download gff for
UFO02257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym78-RA | 195..972 | 1..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:20 Download gff for
UFO02257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29148442..29148552 | 1..111 | 96 | -> | Plus |
| 3R | 29149009..29149506 | 112..609 | 100 | -> | Plus |
| 3R | 29149569..29149737 | 610..778 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:36 Download gff for
UFO02257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24974164..24974274 | 1..111 | 96 | -> | Plus |
| arm_3R | 24974731..24975228 | 112..609 | 100 | -> | Plus |
| arm_3R | 24975291..24975459 | 610..778 | 98 | == | Plus |
