UFO02258.5prime Sequence
1122 bp (988 high quality bases) assembled on 2008-12-21
> UFO02258.5prime
CAGTCGACATGACAACGACCACATCACCTAGAGAAACCACACAGACCACA
TTTACGGTTCGCAAGATGACGGGCCGGCGAATGTCAAAGCTATCCACAGT
CCTGCTGTTCTGCGCCGCCTTGCTGCTGACCAAGTCCTGCGGCATCCTGG
CGCTCAGCGGCGACGGTTTGCCCCAATCCCAGGATGTGGGCCAGGCGGAG
CTATGGAGCGATGATGCCACCACCACCATCATTTCGCCCAGCGAGGAGAA
CAGCGGTTCCGGTGGCTGGGAACTGACCACGGAGGCGGACACCACCATAC
CGAGTGAGGAAACTACTGCGGGCAATGAGGAAACCACCGTTTCCGAAGAG
GAGACCTCCACGGACGCCTCTGGAGATGTAGAGACCACCACTGCTGCGCC
GGAAACTTCACCAGCTGACCAGGAGAGCTCTTCCGCTCCCGAAGAGACCA
CTTCCGCTCCCGAAGAGACCACTTCCGCTCCCGAAGAGACCACTTCCGCT
CCCGAGGAGAGCTCTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCCGAGGA
GACCACTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCCGAAGAGAGCTCTT
CCGCTCCCGAGGAGACCACTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCA
GACCAGACATCATCAGCTCCCAACGAAAGCTCTGCTCCTCCAGAGGAAAC
CTCATCAGCGCCCGAGCAGACATCTTCCGCTCCCGAAGAAACCTCCTCCG
CTCCTGCAGAGCCAGAGAGTTCTAGCACTTCCTCTGCAGCCAGTCCTTCC
ACGCCGGCAGGTACCACCATTGCACCCACCCCGCCCACTTTCAAATGCCA
GAACGGCAGGACTGTTTCCACACATCAGTGGCGAATGCAGCCGTTACCAC
AACTGTCTCCTTGAATCCTGTGCTGCGACAGCTGCAGGACATTGAGCTCA
CGGTGCCCGGAACTGACCGTCTTCCTCGCCGAGCCCTGGGCAGATGCGTG
GAGGGACTTGGCGAGTGCCAGGTGGAAAGCTTCCGTGCCTGTTCGGTGCC
AGATTGGCCGATTGATGAAACCTACATCCTACGCTTGCGTGCCAGTTGGC
AGGGCGGCCTTCCCAAAGTTCA
UFO02258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mur18B-RA | 1615 | CG7874-RA | 40..1150 | 9..1122 | 5055 | 97.6 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..702 | 465..713 | 735 | 86.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 496..744 | 423..671 | 735 | 86.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..713 | 486..745 | 730 | 85.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 517..776 | 423..682 | 730 | 85.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..680 | 505..733 | 635 | 85.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 536..764 | 421..649 | 635 | 85.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..680 | 526..754 | 620 | 84.7 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 557..785 | 421..649 | 620 | 84.7 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..659 | 547..754 | 485 | 82.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 578..785 | 421..628 | 485 | 82.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..638 | 568..754 | 470 | 83.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 599..785 | 421..607 | 470 | 83.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..624 | 591..761 | 375 | 81.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 622..792 | 423..593 | 375 | 81.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..596 | 610..754 | 230 | 77.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 641..785 | 421..565 | 230 | 77.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..575 | 631..754 | 185 | 76.6 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 662..785 | 421..544 | 185 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19213476..19214427 | 122..1075 | 4205 | 98.1 | Plus |
| X | 23542271 | X | 19213777..19214025 | 465..713 | 735 | 86.3 | Plus |
| X | 23542271 | X | 19213819..19214067 | 423..671 | 735 | 86.3 | Plus |
| X | 23542271 | X | 19213777..19214036 | 486..745 | 730 | 85.4 | Plus |
| X | 23542271 | X | 19213840..19214099 | 423..682 | 730 | 85.4 | Plus |
| X | 23542271 | X | 19213775..19214003 | 505..733 | 635 | 85.2 | Plus |
| X | 23542271 | X | 19213859..19214087 | 421..649 | 635 | 85.2 | Plus |
| X | 23542271 | X | 19213775..19214003 | 526..754 | 620 | 84.7 | Plus |
| X | 23542271 | X | 19213880..19214108 | 421..649 | 620 | 84.7 | Plus |
| X | 23542271 | X | 19213293..19213406 | 9..122 | 570 | 100 | Plus |
| X | 23542271 | X | 19213775..19213982 | 547..754 | 485 | 82.2 | Plus |
| X | 23542271 | X | 19213901..19214108 | 421..628 | 485 | 82.2 | Plus |
| X | 23542271 | X | 19213775..19213961 | 568..754 | 470 | 83.4 | Plus |
| X | 23542271 | X | 19213922..19214108 | 421..607 | 470 | 83.4 | Plus |
| X | 23542271 | X | 19213777..19213947 | 591..761 | 375 | 81.3 | Plus |
| X | 23542271 | X | 19213945..19214115 | 423..593 | 375 | 81.3 | Plus |
| X | 23542271 | X | 19213775..19213919 | 610..754 | 230 | 77.2 | Plus |
| X | 23542271 | X | 19213964..19214108 | 421..565 | 230 | 77.2 | Plus |
| X | 23542271 | X | 19213775..19213898 | 631..754 | 185 | 76.6 | Plus |
| X | 23542271 | X | 19213985..19214108 | 421..544 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:55 has no hits.
UFO02258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:29 Download gff for
UFO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7874-RA | 28..1057 | 1..1034 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:57 Download gff for
UFO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mur18B-RA | 31..1060 | 1..1034 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:18 Download gff for
UFO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mur18B-RA | 31..1060 | 1..1034 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:18 Download gff for
UFO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19213284..19213406 | 1..122 | 96 | -> | Plus |
| X | 19213477..19214408 | 123..1058 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:57 Download gff for
UFO02258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19107317..19107439 | 1..122 | 96 | -> | Plus |
| arm_X | 19107510..19108441 | 123..1058 | 98 | <- | Plus |
