UFO02259.5prime Sequence
1126 bp (1021 high quality bases) assembled on 2008-12-21
> UFO02259.5prime
CAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTCTGGCCCTC
ATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGACGAAAGTCA
GGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGACGGGAGGCA
TTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGCAACTTTAT
CCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACTGGATCCAT
CGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACGAGTGGCCA
GTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATCCGGCACTC
ACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCGGGTTTTCC
TGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTCTTCAGGAG
GATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTTCTCCTCCT
GGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTGGGAGTTCC
TCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCCGGGAACTG
GTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCACAGTACCCA
GCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTACCCGGAGC
TGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGGAGCACCTG
GAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCACCAGCGGC
ATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCGAGCCATTG
GGACCATCATTTCTCGATGACACCGAGTACATGAGGATGGCGTCCACAAG
GACCATTTGGAGTGCTGACATCACATGCCTTTGGCTATGGCAGTGGATAT
GGGGGGCGATACACGGTGCTTCACTCGGCGCTACGCAGCTTTCTAGACAT
TCGTTGGCGCGCGGGCCAGGTAGTGTCATAATCATAATCATATTCATATC
ATATCCCACTAGCTAGGAGATCTGTTATGACTATGCCTGGATCTCACAAT
AAAGCCTGGGCCACTGACTTGAACAA
UFO02259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ela-RC | 2135 | CG7021-RC | 20..988 | 8..969 | 4625 | 99 | Plus |
| Ela-RA | 1187 | CG7021-RA | 20..988 | 8..969 | 4625 | 99 | Plus |
| Ela-RB | 1127 | CG7021-RB | 313..928 | 361..969 | 2860 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24865369..24865846 | 8..485 | 2390 | 100 | Plus |
| 3R | 32079331 | 3R | 24866010..24866497 | 482..963 | 2115 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:00:00 has no hits.
UFO02259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:27 Download gff for
UFO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RA | 12..997 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:37 Download gff for
UFO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RA | 13..998 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:29 Download gff for
UFO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RA | 13..998 | 1..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:29 Download gff for
UFO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24865362..24865844 | 1..483 | 99 | -> | Plus |
| 3R | 24866012..24866519 | 484..982 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:37 Download gff for
UFO02259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20691084..20691566 | 1..483 | 99 | -> | Plus |
| arm_3R | 20691734..20692241 | 484..982 | 97 | <- | Plus |
