UFO02269.5prime Sequence
1122 bp (981 high quality bases) assembled on 2008-12-21
> UFO02269.5prime
CAGTCGACATGAGCTGTCCCTATGCAGGAAACGGAAACGATCACGATGAT
TCGGCGGTGCCATTAACCACGGAAGTGGGCAAAATCTATGGAGAGTATCT
GATGCTGGACAAACTGCTGGATGCCCAGTGTATGCTCTCCGAGGAGGACA
AGCGACCCGTGCACGATGAGCATCTGTTCATCATCACGCACCAGGCCTAC
GAGCTTTGGTTCAAGCAGATCATCTTTGAGTTCGACTCCATACGAGACAT
GTTGGATGCAGAGGTCATCGATGAAACCAAGACGCTGGAGATTGTCAAGC
GACTGAACCGAGTGGTTCTGATTCTAAAACTCCTGGTGGACCAAGTGCCC
ATTCTGGAGACCATGACCCCGCTTGACTTCATGGACTTCCGCAAGTACCT
GGCACCCGCATCTGGTTTCCAGTCGCTGCAGTTCCGTTTGATCGAGAACA
AGCTGGGAGTTCTGACAGAGCAGCGGGTGAGATACAACCAGAAGTACTCG
GATGTCTTTAGCGACGAGGAGGCGCGGAATTCGATTCGCAACTCGGAGAA
AGATCCCTCGCTACTGGAGCTAGTGCAGCGATGGCTGGAGAGGACGCCCG
GACTGGAGGAGAGTGGCTTCAACTTCTGGGCCAAGTTTCAGGAGAGCGTC
GATCGATTCCTGGAGGCGCAGGTACAGAGCGCCATGGAGGAGCCCGTGGA
GAAAGCGAAAAACTACCGCCTCATGGACATTGAGAAGCGACGCGAGGTGT
ATCGCTCCATCTTTGATCCGGCAGTGCACGATGCACTGGTGCGACGTGGG
GATCGCCGGTTTAGCCATCGTGCCCTCCAGGGAGCCATCATGATCACCTT
CTATAGGGATGATCCCAGATTCAGCCAGCCACACCAGTTGCTCACCCTGC
TCATGAAATCGACTTCGTTTATACCAAGTGGAGATACATCACGTGATCAT
GGTGCAACGCATGATTGATCCCAACAGTTGGGCACTGGTGCTCCTCTGGA
TATCATATCTGCCCTCCACTCTCATGATCGGGTACAAGGTGTTTCTGGAT
CTGTCATCTGGTCCACTTTCGATTCCCGCGAGGCGATCACCGTGACAGAA
CATCGCAAGAACCTGATCACAA
UFO02269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| v-RA | 1305 | CG2155-RA | 56..1182 | 8..1119 | 5015 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10924536..10925111 | 330..905 | 2850 | 99.7 | Plus |
| X | 23542271 | X | 10924126..10924287 | 34..195 | 810 | 100 | Plus |
| X | 23542271 | X | 10924347..10924481 | 195..329 | 675 | 100 | Plus |
| X | 23542271 | X | 10925237..10925326 | 938..1024 | 270 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:11:26 has no hits.
UFO02269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:08 Download gff for
UFO02269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| v-RA | 30..1141 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:39 Download gff for
UFO02269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| v-RA | 48..1159 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:51 Download gff for
UFO02269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| v-RA | 48..1159 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:51 Download gff for
UFO02269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10924127..10924287 | 35..195 | 100 | -> | Plus |
| X | 10924348..10924481 | 196..329 | 100 | -> | Plus |
| X | 10924536..10925142 | 330..935 | 98 | -> | Plus |
| X | 10925234..10925327 | 936..1024 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:39 Download gff for
UFO02269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10818160..10818320 | 35..195 | 100 | -> | Plus |
| arm_X | 10818381..10818514 | 196..329 | 100 | -> | Plus |
| arm_X | 10818569..10819175 | 330..935 | 98 | -> | Plus |
| arm_X | 10819267..10819360 | 936..1024 | 92 | -> | Plus |
