UFO02271.5prime Sequence
1118 bp (1010 high quality bases) assembled on 2008-12-21
> UFO02271.5prime
CAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCAATGAGAGC
CCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCCCTGAAGGG
CTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCGTCCCTACA
GCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACGAGCCCGCC
ACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTGCCAGTGAG
CCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCATCACTACA
GCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGAATGATCAT
CTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGCTATGGTCT
CTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCCCCTGGAGT
ACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTCGTCGCTCG
GCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGCGAGCCGTA
CGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCCACGCGGAG
GACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCACGCGGCCC
AGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTTGAACGACT
CCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCAGCC
CCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGTGAGACGTG
GATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCCTCGAGCCC
CGTGGCCCGGGATTCGTACTTGTCGCCAGTGAAGACCGCTACTTGTGTCC
AAGCACCCAGCTAGACCCTTGACACTCACGCTCAATTTTGGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGTAAGTGTCATATCATAATCAT
ATCATATCATAATCACACTAGCTAGGAAATCTGTCATGACTGTGCTTGAT
TCCCACAATAAAAACGCCCGCGCACGACGTCTGACAATTCCGAATGGAAT
CTGAGTCATACTGATCTA
UFO02271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mf-RD | 1783 | CG6803-RD | 115..1050 | 9..940 | 4550 | 99.4 | Plus |
| Mf-RJ | 1954 | CG6803-RJ | 115..1033 | 9..925 | 4515 | 99.6 | Plus |
| Mf-RF | 2020 | CG6803-RF | 181..1099 | 9..925 | 4515 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15178280..15178490 | 309..99 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 15174136..15174344 | 697..489 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 15172600..15172830 | 925..697 | 1025 | 98.3 | Minus |
| 3R | 32079331 | 3R | 15176184..15176295 | 489..378 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 15179038..15179129 | 100..9 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 15176362..15176437 | 381..306 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:34 has no hits.
UFO02271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:15 Download gff for
UFO02271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 107..1053 | 1..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:33 Download gff for
UFO02271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 107..1053 | 1..944 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:18 Download gff for
UFO02271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mf-RD | 107..1053 | 1..944 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:18 Download gff for
UFO02271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15172600..15172830 | 697..925 | 98 | <- | Minus |
| 3R | 15174137..15174343 | 490..696 | 100 | <- | Minus |
| 3R | 15176184..15176293 | 380..489 | 100 | <- | Minus |
| 3R | 15176364..15176433 | 310..379 | 100 | <- | Minus |
| 3R | 15178280..15178489 | 100..309 | 100 | <- | Minus |
| 3R | 15179039..15179135 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:33 Download gff for
UFO02271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11004761..11004857 | 1..99 | 95 | | Minus |
| arm_3R | 10998322..10998552 | 697..925 | 98 | <- | Minus |
| arm_3R | 10999859..11000065 | 490..696 | 100 | <- | Minus |
| arm_3R | 11001906..11002015 | 380..489 | 100 | <- | Minus |
| arm_3R | 11002086..11002155 | 310..379 | 100 | <- | Minus |
| arm_3R | 11004002..11004211 | 100..309 | 100 | <- | Minus |
