UFO02273.5prime Sequence
1142 bp (1056 high quality bases) assembled on 2008-12-21
> UFO02273.5prime
CAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAAATAAACGA
TTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAAACCGAGCT
GATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTTGCGGAATC
TGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGGAATACTCT
GGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTGGCCAAGAC
ATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAGTGCACACA
AGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATTATCAAGGA
TTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAACTTGTTCCG
CGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTCCAATTATC
ACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCCAGGTTATC
TCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTGGATCCCAC
AGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCGAGTGCTGC
CCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTCCGGTTTAT
AGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTACTTTCCTAA
GGGTGACCTGGACATTGCTGCCATGCGTAAAGCCTGTGATCTCCTAGTGC
GTCACGCCGACTTCCGTAATTTCTGCAAAATGGACGTGCACAACGGAGTA
ACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCTTGTGATCA
GACAAATCATACAAATTCAGCTACGACATGTACTACCTGGAGATTCAAGC
AAATGCCTTCCTTTGGCACCAAATCCGTTGCATAATGCGTGCTTTTACTT
GTTGCAAAAAAAGGAAACCCGGGCGTAATAAGGTGACCTGCTGATGTGAG
TCTAATCCCTGCAAGCTCAGTACACCCCCGCAATGATGCCCTTAAATTTG
TTTCGTTGCGACTTTCGAAACCCACACAGAATGTAACATTCAAGCACGTG
ATCGCAAAAGCATGATACCGCCGCGAGATCAATGACTAAGCT
UFO02273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3045-RA | 1663 | CG3045-RA | 93..1172 | 9..1078 | 5050 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22173626..22174112 | 870..384 | 2435 | 100 | Minus |
| 2R | 25286936 | 2R | 22174316..22174599 | 292..9 | 1420 | 100 | Minus |
| 2R | 25286936 | 2R | 22173355..22173567 | 1072..870 | 535 | 92.1 | Minus |
| 2R | 25286936 | 2R | 22174168..22174262 | 384..290 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:37 has no hits.
UFO02273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:05 Download gff for
UFO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 132..1232 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:06 Download gff for
UFO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 85..1185 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:01 Download gff for
UFO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 85..1185 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:01 Download gff for
UFO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22173337..22173567 | 871..1086 | 91 | <- | Minus |
| 2R | 22173626..22174111 | 385..870 | 100 | <- | Minus |
| 2R | 22174168..22174259 | 293..384 | 100 | <- | Minus |
| 2R | 22174316..22174606 | 1..292 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:06 Download gff for
UFO02273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18060842..18061072 | 871..1086 | 91 | <- | Minus |
| arm_2R | 18061131..18061616 | 385..870 | 100 | <- | Minus |
| arm_2R | 18061673..18061764 | 293..384 | 100 | <- | Minus |
| arm_2R | 18061821..18062111 | 1..292 | 98 | | Minus |
