UFO02278.5prime Sequence
1055 bp (902 high quality bases) assembled on 2008-12-21
> UFO02278.5prime
CAGTCGACATGTTTTTGCAACTCTTATCTATAAGGTTGGCTATGTCACTG
ATCCTTTTAATCAGTGGACAATGGACTTCAGCTCGTCCCCAGAATCCTTA
CTACGTGGAAAACGGCGGACATGGATATCCGAACCATCATCGCCACCATG
GTCATCACGTACATGGGTCAGGATATGGCCCAGGATCCATTGGACCACCT
CCCTTTGTCTTCGGTCGTTTTCCACCGCCTCCTTCGTATTATCCAGATAA
TCAACCATCAGGAGGTCGTCAACCGTATTATCCGAACGTCGGTGCAGTTC
AAGGACAACCTGGCAGTCAATTTCACCAACATGGAGGTGGTTTTCATAGA
GGACAACAGGAATATCCCTACCCTGTAGGTGATTTTAACAGGGGACATCC
AGGCCTCCAGCAACCGGGTGGAGATTTCAACAGGGGCCAACCAGGTTTTC
AGCAGCCAGGAAATGAATTCAATAGACCACAACCATCTGGAAGGGCGCCA
GGACATCAACAATCTGGCAGCCATGAGGAGCTACCCACCTACCCTCGAGG
ATTGGAACCCCAGCAGCCGGGTGGTGATCCAAATACCCTACAGCCTCGAC
CTGGCCAAAACCCTGGTGGATTCGAACAGCCAAATGAAAATGCTGGCGGA
TTCCAACAGTCAGGCCAAAATAATGGGGGGTTCCGGCAACCAAGCCAAAA
TTCTGGAGGATTCCAACAGCCAGGCCAGAGTACTGGAGGATTCCAGCAAC
CAGGCCAGAGTTCTGGGGGATTCCAACAGCCAGGCCAGAGTACTGGGGGA
TTCCAACAGCCAGGCCAGAGTACTGGAGGATTCCAACAGCCAGGCAGAGT
ACTGGAGGATTCCGGCAGCCAGACCAGAGTCTGGAGGATTCAACAACCAG
ACCAGATTCTGGATAGTTCACACAGTCTAAACAGGACGGAATCTGTACTC
TATATCATACACGCGTCCGAGCGAGATGAGACTTCGACTCATTGCAGTCC
CAGACTTGCAGCTCGACGCAGAATAGAACTCCGGATCTGCGACCAAACAT
CACGA
UFO02278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11395-RB | 2279 | CG11395-RB | 53..966 | 9..918 | 4455 | 99.5 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 53..966 | 9..918 | 4455 | 99.5 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 687..977 | 613..900 | 720 | 83.8 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 687..977 | 613..900 | 720 | 83.8 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 741..962 | 637..857 | 680 | 87.4 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 741..962 | 637..857 | 680 | 87.4 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 657..931 | 643..913 | 660 | 83.6 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 657..931 | 643..913 | 660 | 83.6 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 681..893 | 697..906 | 630 | 87.3 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 681..893 | 697..906 | 630 | 87.3 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 738..978 | 604..844 | 530 | 81.3 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 738..978 | 604..844 | 530 | 81.3 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 807..978 | 643..814 | 470 | 84.9 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 807..978 | 643..814 | 470 | 84.9 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 648..863 | 694..906 | 435 | 81 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 648..863 | 694..906 | 435 | 81 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 687..833 | 763..906 | 375 | 85 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 687..833 | 763..906 | 375 | 85 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 807..978 | 613..784 | 335 | 79.7 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 807..978 | 613..784 | 335 | 79.7 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 837..978 | 613..754 | 275 | 79.6 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 837..978 | 613..754 | 275 | 79.6 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 657..810 | 763..912 | 250 | 79.2 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 657..810 | 763..912 | 250 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17137491..17138269 | 131..906 | 3745 | 99.6 | Plus |
| 2R | 25286936 | 2R | 17138057..17138263 | 637..843 | 675 | 88.4 | Plus |
| 2R | 25286936 | 2R | 17138003..17138269 | 613..878 | 655 | 83.9 | Plus |
| 2R | 25286936 | 2R | 17137292..17137414 | 9..131 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 17137973..17138223 | 643..891 | 585 | 84.1 | Plus |
| 2R | 25286936 | 2R | 17137997..17138193 | 697..891 | 555 | 87.8 | Plus |
| 2R | 25286936 | 2R | 17138054..17138294 | 604..844 | 530 | 81.3 | Plus |
| 2R | 25286936 | 2R | 17138123..17138294 | 643..814 | 470 | 84.9 | Plus |
| 2R | 25286936 | 2R | 17137964..17138151 | 694..880 | 365 | 80.9 | Plus |
| 2R | 25286936 | 2R | 17138123..17138294 | 613..784 | 335 | 79.7 | Plus |
| 2R | 25286936 | 2R | 17138003..17138121 | 763..880 | 305 | 85.7 | Plus |
| 2R | 25286936 | 2R | 17138153..17138294 | 613..754 | 275 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:30 has no hits.
UFO02278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:02 Download gff for
UFO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 42..971 | 1..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:01 Download gff for
UFO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 43..972 | 1..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:57 Download gff for
UFO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 43..972 | 1..924 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:57 Download gff for
UFO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17137282..17137413 | 1..130 | 96 | -> | Plus |
| 2R | 17137491..17138269 | 131..906 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:01 Download gff for
UFO02278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13024787..13024918 | 1..130 | 96 | -> | Plus |
| arm_2R | 13024996..13025774 | 131..906 | 99 | == | Plus |
