UFO02279.5prime Sequence
1112 bp (1010 high quality bases) assembled on 2008-12-21
> UFO02279.5prime
CAGTCGACATGTCGAGCTCTGGAATTGTACTCTATGGGACAGATCTCAGT
CCCTGTGTGAGGACCGTCAAACTTACCCTAAAGGTCCTGAATCTGGACTA
CGAGTACAAGGAGGTGAATCTTCAGGCGGGCGAGCACCTGAGCGAGGAAT
ATGTGAAGAAGAATCCCCAACACACGGTACCGATGCTCGATGATAATGGC
ACTTTCATCTGGGACTCCCATGCCATTGCCGCCTACTTGGTGGACAAGTA
TGCCAAGTCGGATGAGCTGTATCCCAAGGATCTGGCCAAGCGTGCGATCG
TCAATCAGCGTCTCTTCTTCGATGCCAGTGTAATCTATGCCAGTATAGCC
AATGTCAGCCGCCCGTTTTGGATAAACGGTGTTACCGAAGTGCCCCAGGA
AAAACTGGACGCCGTACACCAGGGTCTGAAGCTGCTGGAGACGTTCCTGG
GCAACAGCCCCTACCTGGCCGGCGATTCGCTAACCCTAGCCGATCTGTCC
ACCGGACCCACTGTAAGCGCCGTGCCCGCTGCCGTGGACATAGATCCTGC
TACATATCCCAAGGTCACCGCCTGGTTGGATCGCCTCAATAAGCTGCCCT
ACTACAAGGAGATCAACGAAGCTCCGGCCCAGAGCTACGTCGCCTTCCTG
CGCAGCAAGTGGACCAAGCTGGGCGACAAGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCTGCACTCATCGCAGTACTGTTGTAA
TCATAGCATTCTGCGACATGAGCATCACAAACGGCATGATGACTGATCGC
AGCGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCATGTGAAACCGG
GGCAGAGTGTCATTGGCCGTTAAATCAACTGTGACTACCAGGATGCTGAA
ACGAAAACATTC
UFO02279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstE1-RA | 831 | CG5164-RA | 39..711 | 8..680 | 3365 | 100 | Plus |
| GstE2-RA | 890 | CG17523-RA | 121..355 | 94..328 | 305 | 75.3 | Plus |
| GstE10-RB | 1134 | CG17522-RB | 451..574 | 159..282 | 245 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18398431..18399103 | 8..680 | 3365 | 100 | Plus |
| 2R | 25286936 | 2R | 18399606..18399840 | 94..328 | 305 | 75.3 | Plus |
| 2R | 25286936 | 2R | 18397198..18397321 | 282..159 | 245 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:22 has no hits.
UFO02279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:01 Download gff for
UFO02279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE1-RA | 35..721 | 1..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:37 Download gff for
UFO02279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE1-RA | 32..718 | 1..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:50 Download gff for
UFO02279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE1-RA | 32..718 | 1..687 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:50 Download gff for
UFO02279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18398424..18399110 | 1..687 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:37 Download gff for
UFO02279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14285929..14286615 | 1..687 | 98 | == | Plus |
