UFO02280.5prime Sequence
1150 bp (1047 high quality bases) assembled on 2008-12-21
> UFO02280.5prime
CAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCAAGGAGCTA
TTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCGATCATTAA
ATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTTGACGATCG
TGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCATAGAAGAT
GTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAGAAGAACGA
CTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCATCTGATAC
CAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCACCAAAATTC
AAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGCGACTACAT
TCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGACAGAACCC
AGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGTTGGCACAG
TGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAATACGAGAA
GGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATTACTCGATG
AATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGCAGCAATAT
AATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACATCTCAACT
GACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGAGTTATCTG
TGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCAAGTATAAA
AACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAGCTCCCAAA
ATATGGCACACCCGCCCAAGATCTTCTATGCATACTGATGACCTCACCTA
AGTTTTCAATCAACTGGACAAATTCGACTATTTCATAGAGTATATCACCA
GCAGCTAGTCGACACCTCACTATGCTCATTACATCGGATGCACCCCACAC
TATCCAGTCCACGCCCATCTACCCCGATATAGTCTCTGGGCTTTCATATG
CGCCCAGCGAATGCTCATGTTCTGCCTCCCGCCCGATGTTGATCCATATA
GCACCGTATGGGTATTCCGAAGAAAGCCAATCCGTTAACGTAAGGTTCCT
UFO02280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHKov2-RA | 1450 | CG10675-RA | 58..1177 | 9..1114 | 5150 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25330423..25330921 | 680..182 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 25330197..25330372 | 856..681 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 25330968..25331146 | 187..9 | 880 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25329950..25330142 | 1040..855 | 545 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:31 has no hits.
UFO02280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:59 Download gff for
UFO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 49..1176 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:47 Download gff for
UFO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..1177 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:03 Download gff for
UFO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..1177 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:03 Download gff for
UFO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25330423..25330919 | 184..680 | 100 | <- | Minus |
| 3R | 25329950..25330141 | 856..1040 | 94 | <- | Minus |
| 3R | 25330198..25330372 | 681..855 | 100 | <- | Minus |
| 3R | 25330972..25331153 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:47 Download gff for
UFO02280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21155672..21155863 | 856..1040 | 94 | <- | Minus |
| arm_3R | 21155920..21156094 | 681..855 | 100 | <- | Minus |
| arm_3R | 21156145..21156641 | 184..680 | 100 | <- | Minus |
| arm_3R | 21156694..21156875 | 1..183 | 97 | | Minus |
