UFO02281.5prime Sequence
1155 bp (1039 high quality bases) assembled on 2008-12-21
> UFO02281.5prime
CAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGACCAGACAC
AATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTGGCCCTGAT
GGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCAACCGGATA
GTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACTTGGACGTG
CAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCGGAGAAACC
AAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTATCGATGCGT
TTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGGATAAGACT
TTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTGATTGTCTT
TGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTCATGCGCAT
TTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATTATATCTCA
ACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGACGGCTACAA
AATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCAAACTGATC
TGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGGCGCTGGTG
AATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGTGCCACCTA
CTTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTTCCTGGCCG
AGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCGCTAGCAAG
GACGTTTACGCGTTATCGCTGGCGGTATTATTGGCCACTGCATCTGCACC
GGCCTGGCTGTGATTGGTGGTCGTCTCGTGCTTCCAAATCTCAGTGCGCA
CTGTCACCATTGTGGGTGGCATTGTGTTCATCGGATTCGCCATCTACGCT
GTCGCCATACCTCCGGATGACATGCAAGCTTTCTAGACATTCGTTTGGCG
CCGCGGGCCCAGGTAGTGGTCATATCATTATCATATCATATCATATCACC
ACTAGCCTAGGAGATCTGTCATGAACTATGCTGATTCTCACAAATAAACG
CCGCGCCACGAGCGTCGACAATCGATGGATCTGAGTCTACTGACTCACAC
GGAAT
UFO02281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RF | 2063 | CG42542-RF | 463..1430 | 9..973 | 4765 | 99.7 | Plus |
| CG42542-RC | 1675 | CG42542-RC | 172..1139 | 9..973 | 4765 | 99.7 | Plus |
| CG42542-RB | 1650 | CG42542-RB | 147..1114 | 9..973 | 4765 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15199214..15199504 | 189..479 | 1455 | 100 | Plus |
| 3R | 32079331 | 3R | 15202022..15202204 | 619..801 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 15198971..15199150 | 9..188 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 15202264..15202441 | 799..973 | 740 | 98.3 | Plus |
| 3R | 32079331 | 3R | 15199568..15199710 | 478..620 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:25 has no hits.
UFO02281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:58 Download gff for
UFO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-RB | 183..1164 | 1..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:42 Download gff for
UFO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..1120 | 1..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:38 Download gff for
UFO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..1120 | 1..979 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:38 Download gff for
UFO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15202266..15202441 | 801..973 | 98 | == | Plus |
| 3R | 15202024..15202203 | 621..800 | 100 | -> | Plus |
| 3R | 15198963..15199150 | 1..188 | 98 | -> | Plus |
| 3R | 15199214..15199504 | 189..479 | 100 | -> | Plus |
| 3R | 15199570..15199710 | 480..620 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:42 Download gff for
UFO02281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11024685..11024872 | 1..188 | 98 | -> | Plus |
| arm_3R | 11024936..11025226 | 189..479 | 100 | -> | Plus |
| arm_3R | 11025292..11025432 | 480..620 | 100 | -> | Plus |
| arm_3R | 11027746..11027925 | 621..800 | 100 | -> | Plus |
| arm_3R | 11027988..11028163 | 801..973 | 98 | == | Plus |
