UFO02289.5prime Sequence
1131 bp (997 high quality bases) assembled on 2008-12-21
> UFO02289.5prime
CAGTCGACATGTTCGCCCTGCGCCGCACAGCCGCAATGATGACGTCGGTC
CACCGGCAGCCGCATCTCAGCCAGGCCGTTTTTCGGGCCAATTTCGCCAT
CAGCGCCGCGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGTGGATGTCC
TCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGAGCCAACTG
ATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTTGGTATTGA
GAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGCTGAGGCCA
TCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTCCCGACGAG
AAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCGCCCAACGG
TACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGCAATCATCT
GCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTATTGTGATC
GGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTACGTGGTTCC
CGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGGTCAGGTGA
TCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCCTGGGAATG
TTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCTTTCAAATA
TGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAACACCATTC
TGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACCTGTACAAC
AAGCAGTACAAGAAGGAGTACGAGGCGGCCGGGCATCTGGTATGAACACC
GTCTCATCGACGATATGGTTGCTTATGCCATGAAGTCGGGGGTGGCTTCG
TGTGGCCTGCAGAACTACGACGGTGATGTGCAGTCGGACTCCGTTGCCAG
GGCTACGATCTTCTGGGTCTGATGACCTCCGTGCTGCTATGCCCGATGCA
GACCGTTGGAGCTGAAGCCGCTCACGGACGGTGACCCGTCCCTTCCGCTT
CTACAGCAAGCCAGGAGAACCTCCACACCCCAATGGCTGAATTCGCTGAA
CCCGTGCCTGCTCGTCACTTGCAAGCTGACA
UFO02289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1899 | CG7176-RJ | 296..1413 | 9..1112 | 4965 | 97.4 | Plus |
| Idh-RI | 1776 | CG7176-RI | 173..1290 | 9..1112 | 4965 | 97.4 | Plus |
| Idh-RG | 1809 | CG7176-RG | 206..1323 | 9..1112 | 4965 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8356955..8357906 | 1054..110 | 4200 | 98 | Minus |
| 3L | 28110227 | 3L | 8358556..8358657 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:59:30 has no hits.
UFO02289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:51 Download gff for
UFO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1281 | 3..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:17 Download gff for
UFO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1281 | 3..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:09 Download gff for
UFO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1281 | 3..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:09 Download gff for
UFO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8356932..8357905 | 111..1076 | 97 | <- | Minus |
| 3L | 8358556..8358662 | 3..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:17 Download gff for
UFO02289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8350032..8351005 | 111..1076 | 97 | <- | Minus |
| arm_3L | 8351656..8351762 | 3..110 | 97 | | Minus |
