UFO02290.5prime Sequence
1117 bp (990 high quality bases) assembled on 2008-12-21
> UFO02290.5prime
CAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGGAGCGGACT
CGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCCATTGCAGA
GTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGAAGAGGAGG
ATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACACTAGGCACT
CAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATAAGGGACCT
TATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAATATAAGCA
ACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATGGAAATATA
CAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGGCGGCATGT
TTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTTCGAAGACG
ACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGTTCATCAGG
CGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATTCCGCGCTC
TTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTTGCAACTGC
CTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTTCAGAAAAG
CGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTCCACATTGA
GTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGGCTGCGATG
GCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCCACACTCTG
GGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGCTTCATGAA
AGAACTCCCGACGGCAGACGCCTTGATATGTGCCGCATCTGTTGGCCCGC
GGCGTTGAGATGGTCACATATCCACCGACTATAGATTATTTGTCACTGCC
AGTGCAATTCGACGGAAGTCCTGGTCGGCGATGTACGAGAAATACGAACT
GCCCCACTTTTACAATATCGAGGAGGAGACAGCAAGCTTTCTAGACCATT
CGTTGGCCCCGGTCCCAGTATGGTCAAATCTAATCTAATCTAATCTATCC
AACTAGCCTAGGATCTG
UFO02290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LE-RB | 2073 | CG8995-RB | 935..1966 | 6..1028 | 4890 | 98.8 | Plus |
| PGRP-LE-RA | 1398 | CG8995-RA | 260..1291 | 6..1028 | 4890 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15802140..15802440 | 507..207 | 1505 | 100 | Minus |
| X | 23542271 | X | 15801260..15801613 | 1028..684 | 1295 | 96.3 | Minus |
| X | 23542271 | X | 15802509..15802710 | 207..6 | 1010 | 100 | Minus |
| X | 23542271 | X | 15801963..15802076 | 621..508 | 570 | 100 | Minus |
| X | 23542271 | X | 15801683..15801747 | 686..622 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:26 has no hits.
UFO02290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:50 Download gff for
UFO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LE-RA | 214..1253 | 1..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:59 Download gff for
UFO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LE-RA | 258..1297 | 1..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:55 Download gff for
UFO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LE-RA | 258..1297 | 1..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:55 Download gff for
UFO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15802509..15802712 | 1..207 | 98 | | Minus |
| X | 15801260..15801610 | 687..1028 | 96 | <- | Minus |
| X | 15801683..15801747 | 622..686 | 100 | <- | Minus |
| X | 15801963..15802076 | 508..621 | 100 | <- | Minus |
| X | 15802140..15802439 | 208..507 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:59 Download gff for
UFO02290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15696542..15696745 | 1..207 | 98 | | Minus |
| arm_X | 15695293..15695643 | 687..1028 | 96 | <- | Minus |
| arm_X | 15695716..15695780 | 622..686 | 100 | <- | Minus |
| arm_X | 15695996..15696109 | 508..621 | 100 | <- | Minus |
| arm_X | 15696173..15696472 | 208..507 | 100 | <- | Minus |
