UFO02295.5prime Sequence
1107 bp (999 high quality bases) assembled on 2008-12-21
> UFO02295.5prime
CAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAGATATCGCT
CATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCATCCGTTTT
CGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCTGTCATTGG
CGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATAAAATATGC
TCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTCATATATCA
TCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTATAGCCGCCT
CGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTGCAATAGAC
CAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTACGACGGCGA
TAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCCTAAGAAAT
CGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTGAGGAGTCA
CATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGACGCTGAGTT
AACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGAAATAAACT
CACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAGACCAAAAC
TTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAGCAGGAGCA
GTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATGCGGACCTC
AGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATAAACTAATG
GGATCGCGTGACGGTCAAACGGATCCAACCAAAGAAATGAGGAAATCGCT
ACCCAATTCACGACTACAGGCAATTGATCGTACATGGGTCTAACCACCGA
CAACGAGAAAACATTTTCAGTAGATTCAACGAGTGAAAATAGGACTGCTG
CACTGGAGTCATTTCGCCGAGTACAGACACTTCACAACGTGACCGTCATC
TATGGAGCGCGCGGCGAGAAGAGCGAAGAATTCGTATTCGGCCAGATATG
CATTCATCAAGATTAGATGCACGATAGCCAAGCTTTCTTAGACATTCGTT
TGGGCGC
UFO02295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42503-RA | 1420 | CG42503-RA | 296..1345 | 8..1042 | 4795 | 98.1 | Plus |
| Mocs2-RA | 1420 | CG10238-RA | 296..1345 | 8..1042 | 4795 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25126567..25126875 | 444..136 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 25126167..25126442 | 720..445 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 25125834..25126104 | 983..719 | 980 | 95.9 | Minus |
| 3R | 32079331 | 3R | 25126932..25127064 | 140..8 | 665 | 100 | Minus |
| Y | 3667352 | Y | 3024314..3024414 | 983..887 | 200 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:32 has no hits.
UFO02295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:54 Download gff for
UFO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10238-RA | 275..1312 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:17 Download gff for
UFO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42503-RA | 288..1325 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:33 Download gff for
UFO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mocs2-RA | 288..1325 | 1..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:33 Download gff for
UFO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25125834..25126102 | 721..983 | 96 | <- | Minus |
| 3R | 25126167..25126442 | 445..720 | 100 | <- | Minus |
| 3R | 25126567..25126873 | 138..444 | 100 | <- | Minus |
| 3R | 25126935..25127067 | 1..137 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:17 Download gff for
UFO02295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20951889..20952164 | 445..720 | 100 | <- | Minus |
| arm_3R | 20951556..20951824 | 721..983 | 96 | <- | Minus |
| arm_3R | 20952289..20952595 | 138..444 | 100 | <- | Minus |
| arm_3R | 20952657..20952789 | 1..137 | 97 | | Minus |
