UFO02302.5prime Sequence
1138 bp (959 high quality bases) assembled on 2008-12-21
> UFO02302.5prime
CAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGCAGAATGCT
GAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGGTCACATGG
TCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGAGGAGGAGT
TGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACGACCTGGCC
ATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTGGAGAACGA
TCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAGCTTCAACA
CCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGCCATCGGAT
CTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATTCGTCCCAT
GTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACTGCTCCTGG
ACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATTTGCTTTTG
TGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGTGGAGTGGT
CATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGACGAAGGACT
CTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAAAAGGAGCT
GCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAGGATGCCA
TGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCCCCAATAAAAAACGCCCGGCGGCCACCGAAGCGT
TCTGAACAAATCCAGAATGGAGTTCTGAGGTCATACTGGATTCTATTCAA
CAGAGTCCAAGCGGAGCTCGAATATTCAAATTACGGCCCGCCCTGCCACT
CATCCGCAGTACTGTTGTATCATTAAGCATTCTGCCCGACATGGTAGCAT
CACAAAACGGCATGAATGACTTGATCGCCCAGCCGCATCAGTCCTTGCGC
CTTGCTTAATATTTGGCCATGGTGAAACGGGGCGAGAA
UFO02302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4E-3-RA | 1040 | CG8023-RA | 159..890 | 9..741 | 3640 | 99.9 | Plus |
| eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 224..529 | 210 | 72.1 | Plus |
| eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 224..529 | 210 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8229498..8229757 | 60..319 | 1300 | 100 | Plus |
| 3L | 28110227 | 3L | 8230261..8230418 | 583..741 | 745 | 99.4 | Plus |
| 3L | 28110227 | 3L | 8229952..8230052 | 394..494 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 8230115..8230203 | 494..582 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 8229821..8229898 | 317..394 | 390 | 100 | Plus |
| 3L | 28110227 | 3L | 8229382..8229433 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:50 has no hits.
UFO02302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:58 Download gff for
UFO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-3-RA | 150..886 | 9..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:57 Download gff for
UFO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-3-RA | 159..895 | 9..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:29 Download gff for
UFO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-3-RA | 159..895 | 9..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:29 Download gff for
UFO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8229382..8229433 | 9..60 | 100 | -> | Plus |
| 3L | 8229499..8229757 | 61..319 | 100 | -> | Plus |
| 3L | 8229824..8229898 | 320..394 | 100 | -> | Plus |
| 3L | 8229953..8230052 | 395..494 | 100 | -> | Plus |
| 3L | 8230116..8230203 | 495..582 | 100 | -> | Plus |
| 3L | 8230261..8230423 | 583..747 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:57 Download gff for
UFO02302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8222482..8222533 | 9..60 | 100 | -> | Plus |
| arm_3L | 8222599..8222857 | 61..319 | 100 | -> | Plus |
| arm_3L | 8222924..8222998 | 320..394 | 100 | -> | Plus |
| arm_3L | 8223053..8223152 | 395..494 | 100 | -> | Plus |
| arm_3L | 8223216..8223303 | 495..582 | 100 | -> | Plus |
| arm_3L | 8223361..8223523 | 583..747 | 97 | == | Plus |
