UFO02303.5prime Sequence
1119 bp (972 high quality bases) assembled on 2008-12-21
> UFO02303.5prime
CAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAACTGCCGGCA
ATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGGCAAAAATC
CCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAGTTCGGCCA
TTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAATGCTCAAG
AAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAGCAAAATCC
TCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAGGGATTGGG
CGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGCTGTTGCCA
GACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTCACTGAATC
TTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGAGCTGTCCT
TCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGCAGGAAAGG
GACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTTGAGCTCGC
CAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAGCCAAGGAG
TCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGGGCAGTGCA
CAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTGGACGAGGC
GATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTGCATCGACT
ACATCTGCAAGTCAAGACTGGACACTTTGGCGAGCACTCTAACCAGCTGT
GGAGCATCACGGATGTGCCAACATGGGCCAAGATCAACGCGGGACTAGTT
TAAGATGTACCAAAAGGAGATTCTCTTCCAGTTTCCCGTGATCCAGCACG
TCTACTCCGAGAACTGATGACATTCGAGCCCGTCTTCTCTGGCACAACTC
TGTCCAACGCAGACTGGGTCATGGGGCTCCGCCGACATCCAAACGGCATC
TGCATCGGGACTCCAAACTTGGTGCACAGATTCCTGTTGCAACTGCCTCC
TCTCCGCCCGCGAATTCTCTTAGCATCGACAGAATTGTGGGGGCGACTCG
AGCAATGGGAGCAACGCAA
UFO02303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptpa-RA | 1393 | CG3289-RA | 98..1202 | 9..1113 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3377178..3377809 | 33..664 | 3145 | 99.8 | Plus |
| 2L | 23513712 | 2L | 3377861..3378070 | 660..869 | 955 | 99.1 | Plus |
| 2L | 23513712 | 2L | 3378154..3378367 | 868..1079 | 620 | 90.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:55 has no hits.
UFO02303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:57 Download gff for
UFO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpa-RA | 92..1198 | 9..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:19 Download gff for
UFO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpa-RA | 98..1204 | 9..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:13 Download gff for
UFO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpa-RA | 98..1204 | 9..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:13 Download gff for
UFO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3377099..3377126 | 9..36 | 100 | -> | Plus |
| 2L | 3377182..3377805 | 37..660 | 100 | -> | Plus |
| 2L | 3377862..3378070 | 661..869 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:19 Download gff for
UFO02303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3377099..3377126 | 9..36 | 100 | -> | Plus |
| arm_2L | 3377182..3377805 | 37..660 | 100 | -> | Plus |
| arm_2L | 3377862..3378070 | 661..869 | 99 | -> | Plus |
