UFO02306.5prime Sequence
1122 bp (1018 high quality bases) assembled on 2008-12-21
> UFO02306.5prime
CAGTCGACATGAAGCCGAAGAAATCGGCCTTTGCCAATTCATCCACGGGA
TACGGCAGGAACAAGCACGGTAAAGGACACTCTGGCAAGGATAAAGTCGA
GGGTGGTGGTAAGGGCAAGAGCCGAGACGAGAAGGATAAGCATAAGCATG
AGCAGAAGGTGGACGAGAAGGATGACAAGGATCTAAATTCCGGCTTCGGC
GACTATCTTCGCACTCCGGAGGCATTTGAAATGATGAAACTCTTTGTCTT
CGCCAATACCATAATGCTAATTGTCACCATGGCCTGGCCGCACATCAAGG
AGCAATTCTACATGGTTAATCAATGGCTTGAAAGCTTCCGCGAGGAGCAT
CAGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCTTTAGGGAA
ATAGGCCAGGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGT
AGAAACTGCCGGAAATCGTCGGGTATTCACTCCAGAGCGATGAAACGTTT
CAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATC
ACAGCTCACGTTCTTCATGGCATACGAAATTCGGATGAGCCATCATCAGG
CGGGCAAATGGTGAATAACGCGAATAACTGTGGCTTATTTTTCTTTACGG
TCTTAAGCGTATATCAGCTGAC
UFO02306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..466 | 9..356 | 1740 | 100 | Plus |
| Xport-RA | 949 | CG4468-RA | 119..466 | 9..356 | 1740 | 100 | Plus |
| CG42508-RB | 1029 | CG42508-RB | 119..470 | 9..356 | 1690 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 222..9 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 19914879..19915013 | 356..222 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:02 has no hits.
UFO02306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:54 Download gff for
UFO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 116..463 | 9..356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:36 Download gff for
UFO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..463 | 9..356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:47 Download gff for
UFO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..466 | 9..356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:47 Download gff for
UFO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19914879..19915012 | 223..356 | 100 | <- | Minus |
| 3R | 19915081..19915294 | 9..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:36 Download gff for
UFO02306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740601..15740734 | 223..356 | 100 | <- | Minus |
| arm_3R | 15740803..15741016 | 9..222 | 100 | | Minus |
