UFO02307.5prime Sequence
1130 bp (1022 high quality bases) assembled on 2008-12-21
> UFO02307.5prime
CAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCGGACTGCTC
CACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAGGACAAGAT
TATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGACTGCGACT
ACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGTACAGAGAC
GACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATATGCCATCCC
CGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCACGGAGCCGA
GCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCGCCACCACC
GGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTCTCCAGCCA
CCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGAGCTGTCCC
ACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGACGAACGTG
TATCCCAGGCCCACCATCACGATAATATCCAACGACATGGACGTGGTGAA
GCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGATGGCAGCG
CCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCTACCAGTGC
GTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTGGCCACGTC
CGCGGCGGCGGGCAGGAGCCACGTCGACTTCAGCCTGTGGCTGTTTTGTT
TTCTGTACTACCTGCTCTGCAAGCTGAAAGGTATTGGCCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCATAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTCTGAGTCATTACTGATCTATCACAGAGTCCAGC
GAGCTCGAATATCAAATTACGCCCGACTGCCACTCATCGCAGTACTTGTT
GTATTCATTAGCATTCTGCGAAATGAAGCCATCCAAACCGGCATGATGAC
TGATTCGCCAGCGCATCAGACTGTGCCCTG
UFO02307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5597-RA | 920 | CG5597-RA | 106..885 | 9..789 | 3880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23888125..23888402 | 249..526 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 23888481..23888742 | 527..789 | 1265 | 99.6 | Plus |
| 2R | 25286936 | 2R | 23887872..23888064 | 56..248 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 23887078..23887126 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:14 has no hits.
UFO02307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:52 Download gff for
UFO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5597-RA | 101..887 | 5..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:58 Download gff for
UFO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5597-RA | 102..888 | 5..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:58 Download gff for
UFO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5597-RA | 102..888 | 5..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:58 Download gff for
UFO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23888481..23888745 | 527..793 | 98 | == | Plus |
| 2R | 23887074..23887126 | 5..57 | 96 | -> | Plus |
| 2R | 23887874..23888064 | 58..248 | 100 | -> | Plus |
| 2R | 23888125..23888402 | 249..526 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:58 Download gff for
UFO02307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19774597..19774649 | 5..57 | 96 | -> | Plus |
| arm_2R | 19775397..19775587 | 58..248 | 100 | -> | Plus |
| arm_2R | 19775648..19775925 | 249..526 | 100 | -> | Plus |
| arm_2R | 19776004..19776268 | 527..793 | 98 | == | Plus |
