UFO02312.5prime Sequence
1085 bp (999 high quality bases) assembled on 2008-12-21
> UFO02312.5prime
CAGTCGACATGAACCGTCGCCTTCCAGGAACCATCAGCCAGTGCCAGAAG
CTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTCCACCAGATT
CCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCCAAGTGCTGG
TTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAGTTGTCCTCA
CGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGATAAACATTA
CTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGAGATTGGATC
AGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCCAAATGGGTG
AAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGTTAGCACTTC
TGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCACCGGACTGC
AGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTGGAGACCCCC
GACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGATCATGTGTA
CGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCACGTTTCCCA
ATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCCTATATATCT
GAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAATATCATCTA
CAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGCAGAGGCCC
TGATGAAACTGATCAAGAGGAGAAATATCACGCTTAATGTTCAAGAATCT
CGTTGAAGTGAGACATAAAGATATATAGCCGTGTTCGAGGATCTCGCCAA
ACCAGGAGTTCACTATGAGGAAACGTACTCCATGCTTCATGTGACTCCGC
CGATGAGCACTCCGGATGTGGTGGCCAACTGCAGGAACTGGTAACCCCAC
TGGCTTGTGGACGTCGACCAGTTGACGCTGCAGCACAACAGGTACAGCAC
GTGTTCGGCATCGGCGATTCGGCGTTCAGTTCCACTCGAGACGGCCGCGG
CGGCGGCCGCCCATCCACGGTGTGTTCAAACGTAA
UFO02312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14997-RA | 1605 | CG14997-RA | 89..1171 | 9..1080 | 5020 | 98.2 | Plus |
| CG14997-RB | 1676 | CG14997-RB | 160..1242 | 9..1080 | 5020 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4240952..4241180 | 243..471 | 1130 | 99.6 | Plus |
| 3L | 28110227 | 3L | 4241233..4241435 | 466..668 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 4241492..4241703 | 667..875 | 930 | 98.1 | Plus |
| 3L | 28110227 | 3L | 4240396..4240523 | 9..136 | 640 | 100 | Plus |
| 3L | 28110227 | 3L | 4241903..4242088 | 875..1054 | 555 | 94.1 | Plus |
| 3L | 28110227 | 3L | 4240786..4240891 | 137..242 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:37:38 has no hits.
UFO02312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:00 Download gff for
UFO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14997-RA | 80..1170 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:19 Download gff for
UFO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14997-RB | 152..1242 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:02 Download gff for
UFO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14997-RB | 152..1242 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:02 Download gff for
UFO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4240388..4240523 | 1..136 | 97 | -> | Plus |
| 3L | 4240786..4240891 | 137..242 | 100 | -> | Plus |
| 3L | 4240952..4241176 | 243..467 | 100 | -> | Plus |
| 3L | 4241235..4241435 | 468..668 | 100 | -> | Plus |
| 3L | 4241494..4241703 | 669..875 | 98 | -> | Plus |
| 3L | 4241904..4242088 | 876..1054 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:19 Download gff for
UFO02312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4240388..4240523 | 1..136 | 97 | -> | Plus |
| arm_3L | 4240786..4240891 | 137..242 | 100 | -> | Plus |
| arm_3L | 4240952..4241176 | 243..467 | 100 | -> | Plus |
| arm_3L | 4241235..4241435 | 468..668 | 100 | -> | Plus |
| arm_3L | 4241494..4241703 | 669..875 | 98 | -> | Plus |
| arm_3L | 4241904..4242088 | 876..1054 | 94 | | Plus |
