UFO02314.5prime Sequence
1104 bp (997 high quality bases) assembled on 2008-12-21
> UFO02314.5prime
CAGTCGACATGTCGGAAACAGTTGATAGCACAGAGGTAAAGTCGCCGTCG
TACGACTTATCCAAGTTCCAACTGAAGCGAATCCTAACCAACAACAGCGT
TAGGAAAAGTATATCCCTGCTTGGCACTTTTCCGGATTTAGGAACCGATG
ATGCCATTGTTGTTTTCGAGAAAAATGCGTACCGGGAAAGCGATGTGGCC
ACGGCGTCATCAGAAGAGTCTCCCAAGAAGCCTAGCTATTTTACCGCGGA
CCTGAAAGTTGACACTGAGTTTATCAACAATATCTACGGCAGTTTTCAGG
TTGTGCCGACCCAGGATTTGTGCAGTGTGAAAAGCACAGTCATTTATCCC
GCCACCGAGAAGCACATCGAGAAATACTCAGTATCTCAAAAGTATCTCAT
CCGGGAGACTCCTGATCTCTACCAAAGAATAACTCTTCCATATCTCACCT
CAAGTCAATTCTCCCTCGAGTGGGTCTACAACATACTCGAGCATAAGCAG
GAGACGGAACGTATCGTGTACGAGGACAGGGATCCAAAGACTGGCTTTAT
CCTTCTGCCCGATCTCAAATGGGACGGACGCAATGTGGAAACCCTCTATC
TGCTGGGAATTGTCCACAAGCGCGACATCAAGTCTCTGCGCGACTTGAAT
GAAAGTCATCTCGATCTTTTGCGCAACGTGCGCCAAGCGTCGAAGGACGC
AATTGCCAAGCTATACGGCATTAATCCCAATCAGCTGCGCATGTACTTTC
ATTACCAGCCGTCCTTCTATCACCTCCACGTGCACATCAATCCAGTACGG
AACGATGCACCGGGCATATGGTGCGAGAAGTCCCCACATGCTGGACACGG
TGATCAACAACTTGGAGCTGATGCCGGACTACTATCAGCGAGCCACCTTG
CCGTTTGTCCTGTACGAAGGCAATAGCTGTTGGATCTCTATGGAGCAGGA
GCTACCCATTAGAGCGCTGACAGTATCGGAGCGACGATAAGAGCTCCCTG
ACCTCAGACTTCTTTGACGTCCCCTCCACGAGCTTTACGATGAGAGCGGA
GGAGAAGCAGTGCAAGCGCATAAGTGCTCCGAGCAAGAAGCCGATCGCGT
TCAG
UFO02314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-RA | 1335 | CG2091-RA | 98..1166 | 9..1073 | 4965 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5753563..5754239 | 1002..325 | 3150 | 99.3 | Minus |
| 3R | 32079331 | 3R | 5754509..5754677 | 177..9 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5754299..5754448 | 326..177 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:49 has no hits.
UFO02314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:48 Download gff for
UFO02314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 97..1165 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:50 Download gff for
UFO02314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..1166 | 9..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:48 Download gff for
UFO02314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..1166 | 9..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:48 Download gff for
UFO02314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5754509..5754677 | 9..177 | 100 | | Minus |
| 3R | 5753487..5754239 | 325..1073 | 97 | <- | Minus |
| 3R | 5754301..5754447 | 178..324 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:50 Download gff for
UFO02314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1580231..1580399 | 9..177 | 100 | | Minus |
| arm_3R | 1579209..1579961 | 325..1073 | 97 | <- | Minus |
| arm_3R | 1580023..1580169 | 178..324 | 100 | <- | Minus |
