UFO02316.5prime Sequence
1116 bp (996 high quality bases) assembled on 2008-12-21
> UFO02316.5prime
CAGTCGACATGGAATCGACACTCGCCAAGGTGCTGCTCCTTGTGGGCAGC
CTGCTGATCCTGTGCCGCACCAGCCACGCCTTCATCGTCAGCGTGGACGC
CCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCACCAAGTTTG
GCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTAGACGTGGACATCAAG
ATCAGCGGCCCGGATAACCATGTGATGCACGAGAGCGAAAAGGAGTCGTC
CGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAACCTACACCGTGTGCT
TCAACAACGAACGCAGCAGCATGACCCCCAAGCTGGTCATGTTCTCCATC
GACGTGGGTGACGCACCGCAACGTGCGCCCGGAGCACCCGGCGAGGAGGA
GGTGGGCCACACCAAGCTGGAGGACATGATTCGGGAGCTCTCCGGCACGC
TGACCAGTGTCAAGCACGAACAGGAGTACATGCATGTGCGCGACAAGATC
CATCGTTCGGTGAACGAGAACACCAACTCGCGAGTGGTGCTGTGGTCCAC
CTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGTGTACTACC
TGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAGC
GAGCTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTTAGCATTCTGCCGACAGGAAGCCATCACAACGCATGATG
ACCTGATCGCAGCGCATCAGCACCTGTCGCTGCGTTATATATTTGCCCAT
GTGAAACGGGGCAAGAAGTGTCATATGCCAGTTTAATTCAAACTGTGAAA
CTCACCAGGATGCTGAAACGAAACATTCTCAATAACCCTTAAGAATGCCA
GTACGTACCGCCACTT
UFO02316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHOp24-RB | 1172 | CG3564-RB | 96..719 | 9..632 | 3120 | 100 | Plus |
| CHOp24-RA | 1104 | CG3564-RA | 96..719 | 9..632 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4541216..4541554 | 150..488 | 1695 | 100 | Plus |
| X | 23542271 | X | 4541907..4542053 | 486..632 | 735 | 100 | Plus |
| X | 23542271 | X | 4541003..4541145 | 9..151 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:01:22 has no hits.
UFO02316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:45 Download gff for
UFO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 88..720 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:46 Download gff for
UFO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 90..722 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:27 Download gff for
UFO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHOp24-RA | 90..722 | 1..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:27 Download gff for
UFO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4541217..4541551 | 151..485 | 100 | -> | Plus |
| X | 4541907..4542056 | 486..636 | 98 | == | Plus |
| X | 4540997..4541144 | 1..150 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:46 Download gff for
UFO02316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4435030..4435177 | 1..150 | 97 | -> | Plus |
| arm_X | 4435250..4435584 | 151..485 | 100 | -> | Plus |
| arm_X | 4435940..4436089 | 486..636 | 98 | == | Plus |
