UFO02317.5prime Sequence
1133 bp (1023 high quality bases) assembled on 2008-12-21
> UFO02317.5prime
CAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCCTTTTGGTC
TCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAGTATGGTGA
TGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGAAAACTCGG
CGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGTTGAAGGTG
GATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTGGGCATAAC
TCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCAAAGGATCG
TCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACGAAGTGAAA
ATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATCCAGGGCAA
GGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACATGACAATGG
TTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGGTGAAGAAT
GGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATGAAGCCGGA
GTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAAGGCGCTGG
GTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCATTTACAAG
GAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTACCTGGGCGT
CGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTTTGCGGATG
AATCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGAATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGAATGGAGTTCTGAGGTCATAC
TGGATCTATCACAAGGAGTCCAGCGAGCTCGATTATCAAATTACGCCCCG
CCCTGCACTCATCGCAAGTACTGTTGTATTCATTAAGCATCTGCCGACAT
GGAAGCCATCAAAACGCATGAATGAACCTGAAATCGCCAGCGCAATCAGC
CACCTTGTCGACTGCGTATATAATATTTGGCAA
UFO02317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| to-RB | 1253 | CG11853-RB | 10..757 | 8..755 | 3740 | 100 | Plus |
| to-RA | 1038 | CG11853-RA | 10..757 | 8..755 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25240867..25241172 | 450..755 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 25240366..25240607 | 70..311 | 1210 | 100 | Plus |
| 3R | 32079331 | 3R | 25240674..25240817 | 311..454 | 705 | 99.3 | Plus |
| 3R | 32079331 | 3R | 25240189..25240250 | 8..69 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:26 has no hits.
UFO02317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:44 Download gff for
UFO02317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| to-RA | 10..763 | 8..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:21 Download gff for
UFO02317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| to-RA | 10..763 | 8..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:09 Download gff for
UFO02317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| to-RA | 10..763 | 8..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:09 Download gff for
UFO02317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25240189..25240250 | 8..69 | 100 | -> | Plus |
| 3R | 25240366..25240606 | 70..310 | 100 | -> | Plus |
| 3R | 25240674..25240813 | 311..450 | 100 | -> | Plus |
| 3R | 25240868..25241178 | 451..763 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:21 Download gff for
UFO02317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21065911..21065972 | 8..69 | 100 | -> | Plus |
| arm_3R | 21066088..21066328 | 70..310 | 100 | -> | Plus |
| arm_3R | 21066396..21066535 | 311..450 | 100 | -> | Plus |
| arm_3R | 21066590..21066900 | 451..763 | 98 | == | Plus |
