UFO02318.5prime Sequence
1117 bp (1025 high quality bases) assembled on 2008-12-21
> UFO02318.5prime
CAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCCTATTTATA
TTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTATTCGGAGC
TCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGAAGCCCTGC
GAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCATCATCCTG
CTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCCTACTGCAT
GTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGGCCAACTGG
CTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGGAGATCATG
GGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGTTCCGACTA
CATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAGTGGCTACA
CCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCAGCGACACC
AACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAGGTCACCTT
CGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGCCGGTCTGG
TCATCGCCGCCATCGAATTTGTGGGATTCGTTTTCGCCTGTTGCTTGGCG
AACAGCATTCGGAACTATAGACGCCGTGCGGAATATGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGATCTATCAACAGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTATTCATAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGACCTGATCGCAGCGGCCATCAGCACCTGTCGCCTGCTAATATATTTG
CCATGGGTGAAACGGGGGCTAGAGTGTCCATAATGCCCGTTAATCAACTG
GGTGACTCCACCAGGAA
UFO02318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ea-RC | 1107 | CG18817-RC | 144..821 | 9..686 | 3390 | 100 | Plus |
| Tsp42Ea-RB | 1113 | CG18817-RB | 150..827 | 9..686 | 3390 | 100 | Plus |
| Tsp42Ea-RA | 1118 | CG18817-RA | 155..832 | 9..686 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6997159..6997353 | 423..617 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 7003448..7003642 | 423..617 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 6996675..6996867 | 68..260 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 7002964..7003156 | 68..260 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 6996930..6997092 | 260..422 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 7003219..7003381 | 260..422 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 6997617..6997685 | 618..686 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 7003905..7003973 | 618..686 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 6994425..6994484 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:53 has no hits.
UFO02318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:42 Download gff for
UFO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RC | 141..829 | 1..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:07 Download gff for
UFO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 147..835 | 1..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:28 Download gff for
UFO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 147..835 | 1..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:28 Download gff for
UFO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6994417..6994484 | 1..68 | 95 | -> | Plus |
| 2R | 6996676..6996867 | 69..260 | 100 | -> | Plus |
| 2R | 6996931..6997092 | 261..422 | 100 | -> | Plus |
| 2R | 6997159..6997353 | 423..617 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:07 Download gff for
UFO02318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2881922..2881989 | 1..68 | 95 | -> | Plus |
| arm_2R | 2884181..2884372 | 69..260 | 100 | -> | Plus |
| arm_2R | 2884436..2884597 | 261..422 | 100 | -> | Plus |
| arm_2R | 2884664..2884858 | 423..617 | 100 | -> | Plus |
