UFO02321.5prime Sequence
1114 bp (1008 high quality bases) assembled on 2008-12-21
> UFO02321.5prime
CAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGCTGATTGCT
TCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGCGAGTGCAA
GGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCAGCACCTGA
TCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTGTCTGCTGT
CCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAGACGAGGCC
TTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGCCTGCCAGT
CCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAGAGTTTCCC
TTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAGTCGGACAT
CAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGTACTGACTG
CGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGACTGGACCCA
AACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTGGACTACAA
CAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGTCAACTATG
TGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCTTTAAAAAC
GATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAACGACCATGT
GGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCAGCAGGTCA
CAGCCGCCGGCTGGGGATTTACCGCGGACGGTGTGAAGTCCTCGCACCTG
CTGAAGGTCAACCTCCAGCGATTCAGTGACGAGGTGTGCCAGAAGCGCCT
GCGTTTCAGCATCGATACACGCACCCAGTTCTGTGCCGGCTCATGTCCAG
CCAAGCGGACACCTGCACGGTGACTCCGGCGGACCTATATTCGTCAGCAT
CCGCTCTATCCGTGCTGAGCAGTCATAGGGATTGTCTCATATGGATTAGT
TGTGCTCCCAAGACCCCCGGAGTGTTCTAACAAGTCCACCCTCCTAACAC
GACTGAATCGAGAGCATCGGTTGGGGCATGCAAGTCTTCTAAACATTCGT
TGGCGCGCCGTCAG
UFO02321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3700-RA | 1183 | CG3700-RA | 31..1108 | 9..1078 | 4920 | 98 | Plus |
| CG4927-RC | 1449 | CG4927-RC | 450..628 | 429..607 | 220 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22895060..22895591 | 476..1001 | 2365 | 98.5 | Plus |
| 2R | 25286936 | 2R | 22894465..22894717 | 9..261 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 22894783..22894996 | 262..475 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 16573258..16573333 | 532..607 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:01:10 has no hits.
UFO02321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:41 Download gff for
UFO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RB | 4659..5743 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:36 Download gff for
UFO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RA | 24..1108 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:20 Download gff for
UFO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3700-RA | 24..1108 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:20 Download gff for
UFO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22894458..22894717 | 1..261 | 98 | -> | Plus |
| 2R | 22894783..22894996 | 262..475 | 100 | -> | Plus |
| 2R | 22895060..22895670 | 476..1078 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:36 Download gff for
UFO02321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18781981..18782240 | 1..261 | 98 | -> | Plus |
| arm_2R | 18782306..18782519 | 262..475 | 100 | -> | Plus |
| arm_2R | 18782583..18783193 | 476..1078 | 96 | | Plus |
