UFO02328.5prime Sequence
1122 bp (1027 high quality bases) assembled on 2008-12-21
> UFO02328.5prime
CAGTCGACATGCATACCGTGTACGCGCTTCTGAAGAACAAGCTGAGCGAT
GTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCCTACCTAAA
GGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAGCGAGTTGG
AGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCCTCAACCGA
ACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATTAAACGTTA
CTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAAGCATATTC
AAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTACCTCGCGG
TTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAATTTAGGCGAAA
TCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTCAACATGCTGC
ACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCCTCATCTGC
GAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTAGCCAGAAA
TAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTCTACTACTT
CGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCAGTGGTGGA
AGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGGCGTGATGA
GATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAACGCATTGG
CTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCAGAGAAACGCG
GACGAGGCCGTGCAGGGTGATGAAAGACCTAGAACCACCTCGGCGCCATT
AGCAGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGCAGCAGTGGAGC
CATCAGCAGCGGATCCATATCCTCAGAGTTGCTCCCGCAACGAGCTGGCC
GCGCTTTTCAGTCCCTGTCGCAGGATCACCCGGCGCCTGTGAGAACATGG
AGGTGGGAGTCCGGAGAAGGACCAGTACAGAGCAGCCGCCACAGCACCAG
CGATGATGTAAATGACAGACGATGGTGAAACGAACGTGAGGGGCTGCCAG
CGCTTACGGTGCCCATCGTTAA
UFO02328.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3223-RA | 1488 | CG3223-RA | 89..1186 | 9..1099 | 5120 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8010178..8010680 | 568..1066 | 2095 | 98 | Plus |
| 3R | 32079331 | 3R | 8009702..8010119 | 150..567 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 8009488..8009629 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:19 has no hits.
UFO02328.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:34 Download gff for
UFO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 109..1199 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:17 Download gff for
UFO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 80..1170 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:05 Download gff for
UFO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3223-RA | 80..1170 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:05 Download gff for
UFO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8009479..8009629 | 1..150 | 97 | -> | Plus |
| 3R | 8009703..8010119 | 151..567 | 100 | -> | Plus |
| 3R | 8010178..8010680 | 568..1066 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:17 Download gff for
UFO02328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3835201..3835351 | 1..150 | 97 | -> | Plus |
| arm_3R | 3835425..3835841 | 151..567 | 100 | -> | Plus |
| arm_3R | 3835900..3836402 | 568..1066 | 98 | -> | Plus |
