UFO02331.5prime Sequence
1131 bp (1028 high quality bases) assembled on 2008-12-21
> UFO02331.5prime
CAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAAGCAAGGGG
CAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTGATCACATA
TTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAGTAAAAACA
AGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGCTAGCCGAG
CAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTACGAGCTTAT
GATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAGTTGGGCCG
ATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAATCGGTGGTG
CTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTGTGGCAGGC
GCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAAGACGCTGA
TAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCAACTTGGAC
GTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAATTGACTTC
TGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTATTTTTATTG
ACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACCACGAGGCT
ACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGCCTCAGCAC
GAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAGGCCGCAGG
ATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCCACATTGGT
CTGCCCTCGGAGACCCAACGAAAAGACATCCTGAAGCTGATCCTCCAATC
GGAGGAAGTAAGTCAGGATGTCGACTTGAATCGCTTGTCCCAGCTCACAA
ATGGCTTCTCGGGCTCAGACCTGGCGGGAAATGTGCCGGAATGCTTCAGT
TTACCGAATGAGCAGCTCATCACGTTCAGAGATCCGTCAGCTACAGCGCT
TGATCGCAACAACGTCCGCATCACCATGGACGATTTGCTGGGCTCGCACT
TAAGTAGGAATCAAGATGCACCGAGCAGCTTATTCTTTAAAGAATAGATC
GAATGATGCAAGCTTCTGAACATCTGGCGCG
UFO02331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmd-RC | 1719 | CG5395-RC | 110..1213 | 7..1104 | 5225 | 98.6 | Plus |
| nmd-RA | 1300 | CG5395-RA | 110..1213 | 7..1104 | 5225 | 98.6 | Plus |
| nmd-RB | 1172 | CG5395-RB | 164..1085 | 189..1104 | 4315 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10302736..10303600 | 1053..189 | 4200 | 99.5 | Minus |
| 2L | 23513712 | 2L | 10303654..10303838 | 191..7 | 925 | 100 | Minus |
| 2L | 23513712 | 2L | 14766281..14766791 | 289..799 | 335 | 71 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:37 has no hits.
UFO02331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:32 Download gff for
UFO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmd-RA | 103..1158 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:02 Download gff for
UFO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmd-RA | 105..1160 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:16 Download gff for
UFO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmd-RA | 105..1160 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:16 Download gff for
UFO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10303655..10303843 | 1..190 | 98 | | Minus |
| 2L | 10302732..10303598 | 191..1061 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:02 Download gff for
UFO02331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10303655..10303843 | 1..190 | 98 | | Minus |
| arm_2L | 10302732..10303598 | 191..1061 | 99 | <- | Minus |
