UFO02332.5prime Sequence
1151 bp (1028 high quality bases) assembled on 2008-12-21
> UFO02332.5prime
CAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCCGCTTCACC
CGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGCCGCTTCGA
TGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGTTTTCAGCA
AGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTCCCATCTCG
TCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATCGTTCAGTA
CAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGCTGATTACC
TGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGGGCATGATC
TTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATCACGTATAT
CTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTTCGGCACCA
GGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCGAGTTTATT
TTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGACATGTGTA
CTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCACACCCCTGT
TGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTTCCGGCGGA
TTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCTAGGCAGGC
GACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAACGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGA
GTCCAGCGAGCTCGATATCAAATTACGCCCCGCCTGCACTCATCGCAGTA
CTGTTGTAATTCATTAGCATTCTTGCCGAACATGCAGGCCATCCAACGGC
ATGATGACCCTGAATCGCCAGCGCATCAGCACTTGTCGCCTTGGCGTTAT
ATATTTGCCCATGGTGAAAACGGGGCGAGAATGCCATTGGCCACAGTTTA
C
UFO02332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Der-1-RB | 1243 | CG10908-RB | 280..1014 | 9..743 | 3675 | 100 | Plus |
| Der-1-RA | 1088 | CG10908-RA | 125..859 | 9..743 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1974561..1974818 | 251..508 | 1290 | 100 | Plus |
| 2L | 23513712 | 2L | 1974236..1974480 | 9..253 | 1225 | 100 | Plus |
| 2L | 23513712 | 2L | 1975061..1975184 | 620..743 | 620 | 100 | Plus |
| 2L | 23513712 | 2L | 1974881..1974992 | 509..620 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:00 has no hits.
UFO02332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:30 Download gff for
UFO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10908-RA | 86..832 | 1..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:52 Download gff for
UFO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Der-1-RA | 119..865 | 1..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:32 Download gff for
UFO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Der-1-RA | 119..865 | 1..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:32 Download gff for
UFO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1974230..1974480 | 1..253 | 98 | -> | Plus |
| 2L | 1974564..1974818 | 254..508 | 100 | -> | Plus |
| 2L | 1974881..1974991 | 509..619 | 100 | -> | Plus |
| 2L | 1975061..1975190 | 620..750 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:52 Download gff for
UFO02332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1975061..1975190 | 620..750 | 97 | == | Plus |
| arm_2L | 1974230..1974480 | 1..253 | 98 | -> | Plus |
| arm_2L | 1974564..1974818 | 254..508 | 100 | -> | Plus |
| arm_2L | 1974881..1974991 | 509..619 | 100 | -> | Plus |
