UFO02333.5prime Sequence
1117 bp (1011 high quality bases) assembled on 2008-12-21
> UFO02333.5prime
CAGTCGACATGGCTGCAGTTTCGGATATTCCAGTGCACCTGCCCAAGCTG
CTGGCTCTGTTCAAGACGGTGGTGCCCAAGCTGGTGAACAACAAGCACAA
GGGACAGTACGGACGCATTGGAGTGATCGGTGGGTCCCTGGAGTACACCG
GAGCGCCGTACTTCGCGGCCATTTCCTCGATAAGAGTGGGCGCTGACCTG
GCGCATGTGTTCTGCCATTCAAATGCGTCGGCCATTATCAAGTCCTACAG
TCCCGATCTTATCGTGCATCCAGTGCTAGACTGTGTGGATGCAGTGGAGA
GAATAGCGCCCTGGTTAGAGCGACTTCACGTCGTTGTTATTGGACCTGGA
CTGGGTCGGGAGCCGGGCATCCTGAAGACGGCATCCAACGTACTCAAGCT
GTGCATGGACACCAAGAAACCAGTTGTCATAGACGCCGATGGACTGTTTC
TGCTCAACGACAATCTGAATCTGATCTGTGGACAGCCGAATGTCATACTC
ACGCCAAATGTCATGGAGTTCCAGAGACTGTTTGGCGAGGATGACCAGGC
GGCGCGCCAGAAAATGTCCCTCCTGGGAGCCGGAGTAACTGTCCTGGAGA
AGGGCGCCAACGACAAGATCTATCTCCCTCACTGCAACGAAGTTCACTCA
ATGCCTAGCGGCGGTTCCGGTCGCAGGTGCGGTGGACAAGGTGACCTGCT
CTCCGGATCTTTGGCCACCTTCTTCTCGTGGTCACTGCAGTCGGGTGAAC
CCAATCCCGCCCTGTAGCTGCATGTGCCTCTAGTTACTTTGTGAAAAGTT
AAACGCGGCTGCATTTCAAAAGTTTGGCCGCAGCCTACTGGCCAGTGACA
TGGTCAATCAATACCCAGCGTATTTCAGACCGAGTTCGAAAACAGCGATC
CTCAAGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGG
TCATATCATATCATATCATAATCATATCACACTAGGCTAGGAGATCTGTC
ATGACTAGTGCTTGATTCTCACATAAAAACGCCCGGCGCACGAGCGTTCT
GAACAATCGATGATTCTGAAGTCATTACTGATTTATCACGGGATCAGCGA
GCTCGATTCATACGCCG
UFO02333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 78..977 | 9..905 | 4425 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096655..19097227 | 905..336 | 2715 | 99.5 | Minus |
| 3L | 28110227 | 3L | 19097304..19097632 | 337..9 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:11 has no hits.
UFO02333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:29 Download gff for
UFO02333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 73..983 | 1..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:43 Download gff for
UFO02333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 70..980 | 1..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:30 Download gff for
UFO02333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 70..980 | 1..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:30 Download gff for
UFO02333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19096655..19097227 | 336..905 | 99 | <- | Minus |
| 3L | 19097306..19097640 | 1..335 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:43 Download gff for
UFO02333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19089755..19090327 | 336..905 | 99 | <- | Minus |
| arm_3L | 19090406..19090740 | 1..335 | 99 | | Minus |
