UFO02334.5prime Sequence
1110 bp (1020 high quality bases) assembled on 2008-12-21
> UFO02334.5prime
CAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGGCGCAATCT
CCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAGGAGCCCCT
GCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGCGGTGCCCT
GGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGCAGCCCATC
ATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGACAGGCTGTG
CCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCTGCCCGGGC
ACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCATCTTCTGG
GACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAACTGGAAGAA
CGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTTCATGTACG
CGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCGATATCGCG
GGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACTGGCAGGGC
GCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAAGCAGCCCT
GCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGTACGATGGG
TCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGAATGAGGCA
CAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAGGCTAAAAG
TAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCTACGCACGC
CAGATTCGCTGTCGCGTGCTCAACATTCGGGGTTTTCCCGGCATGAAGTT
CGAGACGCCACAGTGTATGCGGATGTGATTGCCACGCTGCGGGAGATGCC
GCGAAGTGGTCTACGTTGAGGTGCCCGGCACCCATCATCTGCACCTGTCA
CCCCGGATCGAGTGGCGCCCCACATTTTTCGATTCCTGAAGGAGCCGCAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTATGGTATTATCTAT
CATAACCTAAATCATATCCACTAGCTAGGAATTCTGCCTGACATGCTGAA
TCCCACATAA
UFO02334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kraken-RB | 1240 | CG3943-RB | 88..1078 | 8..994 | 4825 | 99.4 | Plus |
| kraken-RA | 1320 | CG3943-RA | 168..1158 | 8..994 | 4825 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 853544..854377 | 165..994 | 3940 | 99.3 | Plus |
| 2L | 23513712 | 2L | 853192..853278 | 79..165 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 852935..853005 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:23 has no hits.
UFO02334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:39 Download gff for
UFO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kraken-RA | 161..1169 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:07 Download gff for
UFO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kraken-RA | 160..1168 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:36 Download gff for
UFO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kraken-RA | 160..1168 | 1..1003 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:36 Download gff for
UFO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 853192..853278 | 79..165 | 100 | -> | Plus |
| 2L | 852927..853005 | 1..78 | 94 | -> | Plus |
| 2L | 853545..854377 | 166..994 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:07 Download gff for
UFO02334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 853192..853278 | 79..165 | 100 | -> | Plus |
| arm_2L | 852927..853005 | 1..78 | 94 | -> | Plus |
| arm_2L | 853545..854377 | 166..994 | 99 | == | Plus |
