UFO02337.5prime Sequence
1117 bp (994 high quality bases) assembled on 2008-12-21
> UFO02337.5prime
CAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTTCCAAAGAG
TACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCCCTGGTCGT
CACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCCGGAACTGT
CTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCGACGTGGAG
ATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAGCGGCGGGTCGT
GCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAGCAGACTTG
AATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGGACGTCATC
GTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGACGCGCCAG
TCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGGCTTCAACT
CGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGCACTACTCG
GATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGATTTCAAGTG
GATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAACGGCAATA
TTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGATGGAGCAG
GTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTACAAGTACAA
GGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGAGGTATTTA
TTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCAACTGGTGCTGGAC
CACCAGGACGTGGTGAACAAGACCAAATGCTCCGGACTGTGCGTCAGCAC
GGGCACGGGCTCAACATCCTGGCACACCAGCATCAATCGCATCACAAGCC
GAAATGTGACGACCTGTTGCGTTCCCTGCCCGACGGCGATTCAAAGACGG
TGATGATGCTACGAAAAATGCAGAGGAGATCGCCCAGCGTACAACAAGCC
TGCTCTTCGCGCCAGACGACCCGGGCCTCTGCTATCATCGGGAGCAAATC
TTGCTTGGCGTGTGCTCGCAAAGAACTTTAAGGAACGCGAATTTGGTGCG
AACGGTTTTGTCAAGTC
UFO02337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-RA | 1808 | CG8080-RA | 422..1543 | 8..1117 | 5060 | 97.5 | Plus |
| CG8080-RB | 1708 | CG8080-RB | 334..1443 | 8..1117 | 4870 | 96.4 | Plus |
| CG8080-RE | 1402 | CG8080-RE | 57..1137 | 49..1117 | 4855 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9091407..9091655 | 295..47 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 9090810..9091056 | 537..291 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 9090189..9090487 | 1035..742 | 1205 | 96.7 | Minus |
| 2R | 25286936 | 2R | 9090540..9090749 | 746..537 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 9092432..9092472 | 48..8 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:42 has no hits.
UFO02337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:22 Download gff for
UFO02337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 494..1562 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:48 Download gff for
UFO02337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 418..1486 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:01 Download gff for
UFO02337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 418..1486 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:01 Download gff for
UFO02337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9090811..9091051 | 296..536 | 100 | <- | Minus |
| 2R | 9091407..9091653 | 49..295 | 100 | <- | Minus |
| 2R | 9092432..9092476 | 1..48 | 91 | | Minus |
| 2R | 9090142..9090485 | 744..1075 | 94 | <- | Minus |
| 2R | 9090543..9090749 | 537..743 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:48 Download gff for
UFO02337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4978316..4978556 | 296..536 | 100 | <- | Minus |
| arm_2R | 4978912..4979158 | 49..295 | 100 | <- | Minus |
| arm_2R | 4979937..4979981 | 1..48 | 91 | | Minus |
| arm_2R | 4977647..4977990 | 744..1075 | 94 | <- | Minus |
| arm_2R | 4978048..4978254 | 537..743 | 100 | <- | Minus |
