UFO02338.5prime Sequence
1161 bp (1007 high quality bases) assembled on 2008-12-21
> UFO02338.5prime
CAGTCGACATGGATAAACTCCGCGGCGGCAGTCTGGGCGGCGGCGGATCC
TCCAGCGGCGCGCCATCGACGGCTCCGGGCCATGAGCACCACCAACTGGA
GCAGTATCAGTACCCCAAAAACCTGATCGAGCAATATCTAAGGGCCTCCA
GCAAGATCAAGAAGTTCGAGCGGGCCGGCTTCTTCAAACGCTTTGCGCCC
AGCGTGGTCGATGTGCAGGCGGACTTCCAGCGACTGGCCTACAGCTTCGA
GGAGTCGGGCATACAGCAGTATGCGGCCATGTGCCACATTGGCTATGCCA
AGTGCGAGTCCTACGGCGGCGCACCGCAGCGCGAATCGGAGGCCTATCTG
CGGGCAGCTAGATCCTTCCTAGCGGCGCACAACGAGTCCGGGCGACTGCA
TCTGCGCACCCGCCACTCGGGATTTCGGGAGGGAGCGGTGCACTGCTATC
ACCGTGCGGCGGATCGAGCGGTGGACGGTTGCGTCTTCAAGGCGGCCATT
CTGCGCGAGTTGAAGCAGCTGCAGCGGCAGCTGGACAGCACCAGCAGCTT
TGCCTCGCCCACCCATCAGATCCATGACCTGGAAATCAGCGCCGAAACGA
GTGGCCAGCGCGGCGATTTTCGCAGTGCACTGCAGCATTACGACGACATT
GTGGACAATGTTTACGAGCGACGCGGTGCTCGCATGTACGGTGAACTATT
GCGGCGCGTTGAGGTGCTGCGTCTGCTGCTCCTAGTCCATTTGAACCTGC
CTCCCGCACGCCAGTCACCCGCCCACATCAAGCTGATCGAGTACTACTAC
AACCTGGCGCAGTTCGAGTCGCTCCCCTGTTCGGCGGACGACGGTGGATC
CGCGGAGCGTCCGGGAGCATTTGTGCCCGAACAGCAGCAGTATGCGCTGG
CGGAGATTACGTGCGCCTGGGTGGAGCGTAAAATGTGCGATCTAAAGCAC
CTGCTGCGCGACTTTGAGCCGAATTTGGATCGCTGAGCGACATGTAAAGC
AGCTGCTGCGTGATGCATGCAGACTGCCCGAGCTACGCAAGCTTTCTAGA
CATCGTTGGCGCGCGGCCCAGGTTAGTGTCATATCATAATCTTATCCTAA
ATCCTAATCCACTAGCCTAGGAATCCTGGCCTGACTATTGTCTGATTCCA
CCATATACAAA
UFO02338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 103..1138 | 8..1036 | 4990 | 99.2 | Plus |
| CG8134-RA | 1421 | CG8134-RA | 103..1138 | 8..1036 | 4990 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704593..15705432 | 188..1023 | 4005 | 99.3 | Plus |
| X | 23542271 | X | 15704227..15704406 | 8..187 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:56 has no hits.
UFO02338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:24:21 Download gff for
UFO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 97..1138 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for
UFO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 97..1138 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:43 Download gff for
UFO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 97..1138 | 1..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:43 Download gff for
UFO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704221..15704406 | 1..187 | 98 | -> | Plus |
| X | 15704593..15705448 | 188..1036 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for
UFO02338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598254..15598439 | 1..187 | 98 | -> | Plus |
| arm_X | 15598626..15599481 | 188..1036 | 99 | | Plus |
